FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6835, 170 aa
  1>>>pF1KB6835 170 - 170 aa - 170 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1320+/-0.000754; mu= 13.0642+/- 0.046
 mean_var=56.6362+/-11.233, 0's: 0 Z-trim(107.5): 4  B-trim: 305 in 1/51
 Lambda= 0.170423
 statistics sampled from 9643 (9644) to 9643 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.686), E-opt: 0.2 (0.296), width:  16
 Scan time:  1.890

The best scores are:                                      opt bits E(32554)
CCDS9029.1 NTS gene_id:4922|Hs108|chr12            ( 170) 1129 285.3 1.2e-77


>>CCDS9029.1 NTS gene_id:4922|Hs108|chr12                 (170 aa)
 initn: 1129 init1: 1129 opt: 1129  Z-score: 1507.3  bits: 285.3 E(32554): 1.2e-77
Smith-Waterman score: 1129; 100.0% identity (100.0% similar) in 170 aa overlap (1-170:1-170)

               10        20        30        40        50        60
pF1KB6 MMAGMKIQLVCMLLLAFSSWSLCSDSEEEMKALEADFLTNMHTSKISKAHVPSWKMTLLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 MMAGMKIQLVCMLLLAFSSWSLCSDSEEEMKALEADFLTNMHTSKISKAHVPSWKMTLLN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VCSLVNNLNSPAEETGEVHEEELVARRKLPTALDGFSLEAMLTIYQLHKICHSRAFQHWE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 VCSLVNNLNSPAEETGEVHEEELVARRKLPTALDGFSLEAMLTIYQLHKICHSRAFQHWE
               70        80        90       100       110       120

              130       140       150       160       170
pF1KB6 LIQEDILDTGNDKNGKEEVIKRKIPYILKRQLYENKPRRPYILKRDSYYY
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 LIQEDILDTGNDKNGKEEVIKRKIPYILKRQLYENKPRRPYILKRDSYYY
              130       140       150       160       170




170 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:10:36 2016 done: Sat Nov  5 20:10:36 2016
 Total Scan time:  1.890 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]