FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6835, 170 aa
  1>>>pF1KB6835 170 - 170 aa - 170 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9098+/-0.000337; mu= 14.4313+/- 0.021
 mean_var=55.3777+/-10.862, 0's: 0 Z-trim(114.2): 1  B-trim: 1129 in 1/53
 Lambda= 0.172348
 statistics sampled from 23935 (23936) to 23935 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.281), width:  16
 Scan time:  5.530

The best scores are:                                      opt bits E(85289)
NP_006174 (OMIM: 162650) neurotensin/neuromedin N  ( 170) 1129 288.3 3.9e-78


>>NP_006174 (OMIM: 162650) neurotensin/neuromedin N prep  (170 aa)
 initn: 1129 init1: 1129 opt: 1129  Z-score: 1523.8  bits: 288.3 E(85289): 3.9e-78
Smith-Waterman score: 1129; 100.0% identity (100.0% similar) in 170 aa overlap (1-170:1-170)

               10        20        30        40        50        60
pF1KB6 MMAGMKIQLVCMLLLAFSSWSLCSDSEEEMKALEADFLTNMHTSKISKAHVPSWKMTLLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MMAGMKIQLVCMLLLAFSSWSLCSDSEEEMKALEADFLTNMHTSKISKAHVPSWKMTLLN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VCSLVNNLNSPAEETGEVHEEELVARRKLPTALDGFSLEAMLTIYQLHKICHSRAFQHWE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 VCSLVNNLNSPAEETGEVHEEELVARRKLPTALDGFSLEAMLTIYQLHKICHSRAFQHWE
               70        80        90       100       110       120

              130       140       150       160       170
pF1KB6 LIQEDILDTGNDKNGKEEVIKRKIPYILKRQLYENKPRRPYILKRDSYYY
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LIQEDILDTGNDKNGKEEVIKRKIPYILKRQLYENKPRRPYILKRDSYYY
              130       140       150       160       170




170 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:10:37 2016 done: Sat Nov  5 20:10:38 2016
 Total Scan time:  5.530 Total Display time: -0.070

Function used was FASTA [36.3.4 Apr, 2011]