Result of FASTA (ccds) for
pF1KB6839
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6839, 172 aa
1>>>pF1KB6839 172 - 172 aa - 172 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9042+/-0.000681; mu= 14.3731+/- 0.041
mean_var=57.2717+/-11.366, 0's: 0 Z-trim(108.8): 18 B-trim: 2 in 1/52
Lambda= 0.169474
statistics sampled from 10424 (10441) to 10424 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.711), E-opt: 0.2 (0.321), width: 16
Scan time: 1.870
The best scores are: opt bits E(32554)
CCDS4791.1 NUDT3 gene_id:11165|Hs108|chr6 ( 172) 1137 285.6 1e-77
CCDS44952.1 NUDT4 gene_id:11163|Hs108|chr12 ( 180) 845 214.3 3.2e-56
CCDS9044.1 NUDT4 gene_id:11163|Hs108|chr12 ( 181) 833 211.3 2.5e-55
CCDS43952.1 NUDT11 gene_id:55190|Hs108|chrX ( 164) 818 207.6 2.9e-54
CCDS35278.1 NUDT10 gene_id:170685|Hs108|chrX ( 164) 808 205.2 1.6e-53
CCDS76584.1 NUDT4 gene_id:11163|Hs108|chr12 ( 128) 539 139.4 8.1e-34
CCDS73504.1 NUDT4 gene_id:11163|Hs108|chr12 ( 129) 527 136.4 6.2e-33
>>CCDS4791.1 NUDT3 gene_id:11165|Hs108|chr6 (172 aa)
initn: 1137 init1: 1137 opt: 1137 Z-score: 1508.9 bits: 285.6 E(32554): 1e-77
Smith-Waterman score: 1137; 100.0% identity (100.0% similar) in 172 aa overlap (1-172:1-172)
10 20 30 40 50 60
pF1KB6 MMKLKSNQTRTYDGDGYKKRAACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MMKLKSNQTRTYDGDGYKKRAACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 VAAVREVCEEAGVKGTLGRLVGIFENQERKHRTYVYVLIVTEVLEDWEDSVNIGRKREWF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VAAVREVCEEAGVKGTLGRLVGIFENQERKHRTYVYVLIVTEVLEDWEDSVNIGRKREWF
70 80 90 100 110 120
130 140 150 160 170
pF1KB6 KIEDAIKVLQYHKPVQASYFETLRQGYSANNGTPVVATTYSVSAQSSMSGIR
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KIEDAIKVLQYHKPVQASYFETLRQGYSANNGTPVVATTYSVSAQSSMSGIR
130 140 150 160 170
>>CCDS44952.1 NUDT4 gene_id:11163|Hs108|chr12 (180 aa)
initn: 845 init1: 845 opt: 845 Z-score: 1122.8 bits: 214.3 E(32554): 3.2e-56
Smith-Waterman score: 845; 79.1% identity (90.5% similar) in 158 aa overlap (1-158:1-158)
10 20 30 40 50 60
pF1KB6 MMKLKSNQTRTYDGDGYKKRAACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPS
:::.: ::::::: .:.::::::::::::.:.:::::::::.::.::::::::::::::.
CCDS44 MMKFKPNQTRTYDREGFKKRAACLCFRSEQEDEVLLVSSSRYPDQWIVPGGGMEPEEEPG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 VAAVREVCEEAGVKGTLGRLVGIFENQERKHRTYVYVLIVTEVLEDWEDSVNIGRKREWF
:::::: ::::::: ::::.::::::.:::::::::: :::.:::::::::::::::::
CCDS44 GAAVREVYEEAGVKGKLGRLLGIFENQDRKHRTYVYVLTVTEILEDWEDSVNIGRKREWF
70 80 90 100 110 120
130 140 150 160 170
pF1KB6 KIEDAIKVLQYHKPVQASYFETLRQGYSANNGTPVVATTYSVSAQSSMSGIR
:.:::::::: ::::.: :.: :. : : ::. .: .
CCDS44 KVEDAIKVLQCHKPVHAEYLEKLKLGCSPANGNSTVPSLPDNNALFVTAAQTSGLPSSVR
130 140 150 160 170 180
>>CCDS9044.1 NUDT4 gene_id:11163|Hs108|chr12 (181 aa)
initn: 836 init1: 482 opt: 833 Z-score: 1106.9 bits: 211.3 E(32554): 2.5e-55
Smith-Waterman score: 833; 78.6% identity (89.9% similar) in 159 aa overlap (1-158:1-159)
10 20 30 40 50 60
pF1KB6 MMKLKSNQTRTYDGDGYKKRAACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPS
:::.: ::::::: .:.::::::::::::.:.:::::::::.::.::::::::::::::.
CCDS90 MMKFKPNQTRTYDREGFKKRAACLCFRSEQEDEVLLVSSSRYPDQWIVPGGGMEPEEEPG
10 20 30 40 50 60
70 80 90 100 110
pF1KB6 VAAVREVCEEAGVKGTLGRLVGIFE-NQERKHRTYVYVLIVTEVLEDWEDSVNIGRKREW
:::::: ::::::: ::::.:::: ::.:::::::::: :::.::::::::::::::::
CCDS90 GAAVREVYEEAGVKGKLGRLLGIFEQNQDRKHRTYVYVLTVTEILEDWEDSVNIGRKREW
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 FKIEDAIKVLQYHKPVQASYFETLRQGYSANNGTPVVATTYSVSAQSSMSGIR
::.:::::::: ::::.: :.: :. : : ::. .: .
CCDS90 FKVEDAIKVLQCHKPVHAEYLEKLKLGCSPANGNSTVPSLPDNNALFVTAAQTSGLPSSV
130 140 150 160 170 180
CCDS90 R
>>CCDS43952.1 NUDT11 gene_id:55190|Hs108|chrX (164 aa)
initn: 821 init1: 477 opt: 818 Z-score: 1087.7 bits: 207.6 E(32554): 2.9e-54
Smith-Waterman score: 818; 76.7% identity (89.3% similar) in 159 aa overlap (2-159:1-159)
10 20 30 40 50 60
pF1KB6 MMKLKSNQTRTYDGDGYKKRAACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPS
:: : ::::::: .:.:::::::::::: :.:::::::::.:::::::::::::::::.
CCDS43 MKCKPNQTRTYDPEGFKKRAACLCFRSEREDEVLLVSSSRYPDRWIVPGGGMEPEEEPG
10 20 30 40 50
70 80 90 100 110
pF1KB6 VAAVREVCEEAGVKGTLGRLVGIFE-NQERKHRTYVYVLIVTEVLEDWEDSVNIGRKREW
:::::: ::::::: ::::.:.:: ::.:::::::::: :::.::::::::.:::::::
CCDS43 GAAVREVYEEAGVKGKLGRLLGVFEQNQDRKHRTYVYVLTVTELLEDWEDSVSIGRKREW
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 FKIEDAIKVLQYHKPVQASYFETLRQGYSANNGTPVVATTYSVSAQSSMSGIR
::.:::::::: ::::.: :.: :. : : .::. .. ..
CCDS43 FKVEDAIKVLQCHKPVHAEYLEKLKLGGSPTNGNSMAPSSPDSDP
120 130 140 150 160
>>CCDS35278.1 NUDT10 gene_id:170685|Hs108|chrX (164 aa)
initn: 810 init1: 476 opt: 808 Z-score: 1074.5 bits: 205.2 E(32554): 1.6e-53
Smith-Waterman score: 808; 76.1% identity (88.7% similar) in 159 aa overlap (2-159:1-159)
10 20 30 40 50 60
pF1KB6 MMKLKSNQTRTYDGDGYKKRAACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPS
:: : ::::::: .:.:::::::::::: :.:::::::::.:::::::::::::::::.
CCDS35 MKCKPNQTRTYDPEGFKKRAACLCFRSEREDEVLLVSSSRYPDRWIVPGGGMEPEEEPG
10 20 30 40 50
70 80 90 100 110
pF1KB6 VAAVREVCEEAGVKGTLGRLVGIFE-NQERKHRTYVYVLIVTEVLEDWEDSVNIGRKREW
:::::: ::::::: ::::.:.:: ::. ::::::::: :::.::::::::.:::::::
CCDS35 GAAVREVYEEAGVKGKLGRLLGVFEQNQDPKHRTYVYVLTVTELLEDWEDSVSIGRKREW
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 FKIEDAIKVLQYHKPVQASYFETLRQGYSANNGTPVVATTYSVSAQSSMSGIR
::.:::::::: ::::.: :.: :. : : .::. .. ..
CCDS35 FKVEDAIKVLQCHKPVHAEYLEKLKLGGSPTNGNSMAPSSPDSDP
120 130 140 150 160
>>CCDS76584.1 NUDT4 gene_id:11163|Hs108|chr12 (128 aa)
initn: 551 init1: 539 opt: 539 Z-score: 720.7 bits: 139.4 E(32554): 8.1e-34
Smith-Waterman score: 539; 77.4% identity (87.7% similar) in 106 aa overlap (53-158:1-106)
30 40 50 60 70 80
pF1KB6 CLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVG
:::::::. :::::: ::::::: ::::.:
CCDS76 MEPEEEPGGAAVREVYEEAGVKGKLGRLLG
10 20 30
90 100 110 120 130 140
pF1KB6 IFENQERKHRTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIKVLQYHKPVQASYFET
:::::.:::::::::: :::.::::::::::::::::::.:::::::: ::::.: :.:
CCDS76 IFENQDRKHRTYVYVLTVTEILEDWEDSVNIGRKREWFKVEDAIKVLQCHKPVHAEYLEK
40 50 60 70 80 90
150 160 170
pF1KB6 LRQGYSANNGTPVVATTYSVSAQSSMSGIR
:. : : ::. .: .
CCDS76 LKLGCSPANGNSTVPSLPDNNALFVTAAQTSGLPSSVR
100 110 120
>>CCDS73504.1 NUDT4 gene_id:11163|Hs108|chr12 (129 aa)
initn: 540 init1: 366 opt: 527 Z-score: 704.8 bits: 136.4 E(32554): 6.2e-33
Smith-Waterman score: 527; 76.6% identity (86.9% similar) in 107 aa overlap (53-158:1-107)
30 40 50 60 70 80
pF1KB6 CLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVG
:::::::. :::::: ::::::: ::::.:
CCDS73 MEPEEEPGGAAVREVYEEAGVKGKLGRLLG
10 20 30
90 100 110 120 130 140
pF1KB6 IFE-NQERKHRTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIKVLQYHKPVQASYFE
::: ::.:::::::::: :::.::::::::::::::::::.:::::::: ::::.: :.:
CCDS73 IFEQNQDRKHRTYVYVLTVTEILEDWEDSVNIGRKREWFKVEDAIKVLQCHKPVHAEYLE
40 50 60 70 80 90
150 160 170
pF1KB6 TLRQGYSANNGTPVVATTYSVSAQSSMSGIR
:. : : ::. .: .
CCDS73 KLKLGCSPANGNSTVPSLPDNNALFVTAAQTSGLPSSVR
100 110 120
172 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 00:10:33 2016 done: Sat Nov 5 00:10:34 2016
Total Scan time: 1.870 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]