Result of FASTA (ccds) for
pF1KB6840
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6840, 191 aa
1>>>pF1KB6840 191 - 191 aa - 191 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0551+/-0.000827; mu= 13.9730+/- 0.049
mean_var=58.8586+/-11.904, 0's: 0 Z-trim(106.2): 32 B-trim: 165 in 1/48
Lambda= 0.167174
statistics sampled from 8845 (8857) to 8845 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.655), E-opt: 0.2 (0.272), width: 16
Scan time: 1.880
The best scores are: opt bits E(32554)
CCDS4373.1 KCNMB1 gene_id:3779|Hs108|chr5 ( 191) 1272 314.9 1.9e-86
CCDS3223.1 KCNMB2 gene_id:10242|Hs108|chr3 ( 235) 534 136.9 8.8e-33
CCDS43172.1 KCNMB3 gene_id:27094|Hs108|chr3 ( 257) 235 64.8 4.9e-11
CCDS43173.1 KCNMB3 gene_id:27094|Hs108|chr3 ( 275) 235 64.9 5.1e-11
CCDS3225.1 KCNMB3 gene_id:27094|Hs108|chr3 ( 277) 235 64.9 5.2e-11
CCDS3226.1 KCNMB3 gene_id:27094|Hs108|chr3 ( 279) 235 64.9 5.2e-11
>>CCDS4373.1 KCNMB1 gene_id:3779|Hs108|chr5 (191 aa)
initn: 1272 init1: 1272 opt: 1272 Z-score: 1665.3 bits: 314.9 E(32554): 1.9e-86
Smith-Waterman score: 1272; 100.0% identity (100.0% similar) in 191 aa overlap (1-191:1-191)
10 20 30 40 50 60
pF1KB6 MVKKLVMAQKRGETRALCLGVTMVVCAVITYYILVTTVLPLYQKSVWTQESKCHLIETNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MVKKLVMAQKRGETRALCLGVTMVVCAVITYYILVTTVLPLYQKSVWTQESKCHLIETNI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 RDQEELKGKKVPQYPCLWVNVSAAGRWAVLYHTEDTRDQNQQCSYIPGSVDNYQTARADV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RDQEELKGKKVPQYPCLWVNVSAAGRWAVLYHTEDTRDQNQQCSYIPGSVDNYQTARADV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 EKVRAKFQEQQVFYCFSAPRGNETSVLFQRLYGPQALLFSLFWPTFLLTGGLLIIAMVKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EKVRAKFQEQQVFYCFSAPRGNETSVLFQRLYGPQALLFSLFWPTFLLTGGLLIIAMVKS
130 140 150 160 170 180
190
pF1KB6 NQYLSILAAQK
:::::::::::
CCDS43 NQYLSILAAQK
190
>>CCDS3223.1 KCNMB2 gene_id:10242|Hs108|chr3 (235 aa)
initn: 532 init1: 339 opt: 534 Z-score: 702.0 bits: 136.9 E(32554): 8.8e-33
Smith-Waterman score: 534; 43.5% identity (73.1% similar) in 193 aa overlap (3-187:34-226)
10 20 30
pF1KB6 MVKKLVMAQKRGETRALCLGVTMVVCAVITYY
.: : : : :: ::. ::..:.::... :.
CCDS32 WTSGRTSSSYRHDEKRNIYQKIRDHDLLDKRKTVTALKAGEDRAILLGLAMMVCSIMMYF
10 20 30 40 50 60
40 50 60 70 80
pF1KB6 ILVTTVLPLYQKSVWTQESKCHLIETNIRDQEELK---GK---KVPQYPCL--WVNVSAA
.: :.: :..::::.::.: :....: . . . : :. ::::: .::....
CCDS32 LLGITLLRSYMQSVWTEESQCTLLNASITETFNCSFSCGPDCWKLSQYPCLQVYVNLTSS
70 80 90 100 110 120
90 100 110 120 130 140
pF1KB6 GRWAVLYHTEDTRDQNQQCSYIPGSVDNYQTARADVEKVRAKFQEQQVFYCFSAPRGNET
:. .:::::.: ::.::::: :.. . . :. : .:.. : : :.: :.::.
CCDS32 GEKLLLYHTEETIKINQKCSYIPKCGKNFEESMSLVNVVMENFRKYQHFSCYSDPEGNQK
130 140 150 160 170 180
150 160 170 180 190
pF1KB6 SVLFQRLYGPQALLFSLFWPTFLLTGGLLIIAMVKSNQYLSILAAQK
::.. .::. ..:. :::::: ...::. :.:::: .::::.:
CCDS32 SVILTKLYSSNVLFHSLFWPTCMMAGGVAIVAMVKLTQYLSLLCERIQRINR
190 200 210 220 230
>>CCDS43172.1 KCNMB3 gene_id:27094|Hs108|chr3 (257 aa)
initn: 324 init1: 153 opt: 235 Z-score: 311.7 bits: 64.8 E(32554): 4.9e-11
Smith-Waterman score: 318; 31.0% identity (63.1% similar) in 187 aa overlap (12-187:32-218)
10 20 30 40
pF1KB6 MVKKLVMAQKRGETRALCLGVTMVVCAVITYYILVTTVLPL
:: ::. :: .:. .:. ...: ::.:
CCDS43 TAFPASGKKRETDYSDGDPLDVHKRLPSSAGEDRAVMLGFAMMGFSVLMFFLLGTTILKP
10 20 30 40 50 60
50 60 70 80 90
pF1KB6 YQKSVWTQESKCHLIETNIRDQEE-------LKGKKVPQYPCL--WVNVSAAGRWAVLYH
.. :. .:: : :.:.: :. .. . .:::: .::.: :. :.:..
CCDS43 FMLSIQREESTCTAIHTDIMDDWLDCAFTCGVHCHGQGKYPCLQVFVNLSHPGQKALLHY
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB6 TEDTRDQNQQCSYIPGSVDNYQTARADVEKVRAKFQEQQ--VFYCFSAPRGNETSVLFQR
.:.. . : .: : : .. . .. .. :.... : :: .: .. .:.. .
CCDS43 NEEAVQINPKCFYTPKCHQDRNDLLNSALDIKEFFDHKNGTPFSCFYSPASQSEDVILIK
130 140 150 160 170 180
160 170 180 190
pF1KB6 LYGPQALLFSLFWPTFLLTGGLLIIAMVKSNQYLSILAAQK
: .:.. ::::.. : :: ::..::. .:.::.:
CCDS43 KYDQMAIFHCLFWPSLTLLGGALIVGMVRLTQHLSLLCEKYSTVVRDEVGGKVPYIEQHQ
190 200 210 220 230 240
CCDS43 FKLCIMRRSKGRAEKS
250
>>CCDS43173.1 KCNMB3 gene_id:27094|Hs108|chr3 (275 aa)
initn: 324 init1: 153 opt: 235 Z-score: 311.2 bits: 64.9 E(32554): 5.1e-11
Smith-Waterman score: 318; 31.0% identity (63.1% similar) in 187 aa overlap (12-187:50-236)
10 20 30 40
pF1KB6 MVKKLVMAQKRGETRALCLGVTMVVCAVITYYILVTTVLPL
:: ::. :: .:. .:. ...: ::.:
CCDS43 TAFPASGKKRETDYSDGDPLDVHKRLPSSAGEDRAVMLGFAMMGFSVLMFFLLGTTILKP
20 30 40 50 60 70
50 60 70 80 90
pF1KB6 YQKSVWTQESKCHLIETNIRDQEE-------LKGKKVPQYPCL--WVNVSAAGRWAVLYH
.. :. .:: : :.:.: :. .. . .:::: .::.: :. :.:..
CCDS43 FMLSIQREESTCTAIHTDIMDDWLDCAFTCGVHCHGQGKYPCLQVFVNLSHPGQKALLHY
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB6 TEDTRDQNQQCSYIPGSVDNYQTARADVEKVRAKFQEQQ--VFYCFSAPRGNETSVLFQR
.:.. . : .: : : .. . .. .. :.... : :: .: .. .:.. .
CCDS43 NEEAVQINPKCFYTPKCHQDRNDLLNSALDIKEFFDHKNGTPFSCFYSPASQSEDVILIK
140 150 160 170 180 190
160 170 180 190
pF1KB6 LYGPQALLFSLFWPTFLLTGGLLIIAMVKSNQYLSILAAQK
: .:.. ::::.. : :: ::..::. .:.::.:
CCDS43 KYDQMAIFHCLFWPSLTLLGGALIVGMVRLTQHLSLLCEKYSTVVRDEVGGKVPYIEQHQ
200 210 220 230 240 250
CCDS43 FKLCIMRRSKGRAEKS
260 270
>>CCDS3225.1 KCNMB3 gene_id:27094|Hs108|chr3 (277 aa)
initn: 324 init1: 153 opt: 235 Z-score: 311.2 bits: 64.9 E(32554): 5.2e-11
Smith-Waterman score: 318; 31.0% identity (63.1% similar) in 187 aa overlap (12-187:52-238)
10 20 30 40
pF1KB6 MVKKLVMAQKRGETRALCLGVTMVVCAVITYYILVTTVLPL
:: ::. :: .:. .:. ...: ::.:
CCDS32 TAFPASGKKRETDYSDGDPLDVHKRLPSSAGEDRAVMLGFAMMGFSVLMFFLLGTTILKP
30 40 50 60 70 80
50 60 70 80 90
pF1KB6 YQKSVWTQESKCHLIETNIRDQEE-------LKGKKVPQYPCL--WVNVSAAGRWAVLYH
.. :. .:: : :.:.: :. .. . .:::: .::.: :. :.:..
CCDS32 FMLSIQREESTCTAIHTDIMDDWLDCAFTCGVHCHGQGKYPCLQVFVNLSHPGQKALLHY
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB6 TEDTRDQNQQCSYIPGSVDNYQTARADVEKVRAKFQEQQ--VFYCFSAPRGNETSVLFQR
.:.. . : .: : : .. . .. .. :.... : :: .: .. .:.. .
CCDS32 NEEAVQINPKCFYTPKCHQDRNDLLNSALDIKEFFDHKNGTPFSCFYSPASQSEDVILIK
150 160 170 180 190 200
160 170 180 190
pF1KB6 LYGPQALLFSLFWPTFLLTGGLLIIAMVKSNQYLSILAAQK
: .:.. ::::.. : :: ::..::. .:.::.:
CCDS32 KYDQMAIFHCLFWPSLTLLGGALIVGMVRLTQHLSLLCEKYSTVVRDEVGGKVPYIEQHQ
210 220 230 240 250 260
CCDS32 FKLCIMRRSKGRAEKS
270
>>CCDS3226.1 KCNMB3 gene_id:27094|Hs108|chr3 (279 aa)
initn: 324 init1: 153 opt: 235 Z-score: 311.1 bits: 64.9 E(32554): 5.2e-11
Smith-Waterman score: 318; 31.0% identity (63.1% similar) in 187 aa overlap (12-187:54-240)
10 20 30 40
pF1KB6 MVKKLVMAQKRGETRALCLGVTMVVCAVITYYILVTTVLPL
:: ::. :: .:. .:. ...: ::.:
CCDS32 TAFPASGKKRETDYSDGDPLDVHKRLPSSAGEDRAVMLGFAMMGFSVLMFFLLGTTILKP
30 40 50 60 70 80
50 60 70 80 90
pF1KB6 YQKSVWTQESKCHLIETNIRDQEE-------LKGKKVPQYPCL--WVNVSAAGRWAVLYH
.. :. .:: : :.:.: :. .. . .:::: .::.: :. :.:..
CCDS32 FMLSIQREESTCTAIHTDIMDDWLDCAFTCGVHCHGQGKYPCLQVFVNLSHPGQKALLHY
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB6 TEDTRDQNQQCSYIPGSVDNYQTARADVEKVRAKFQEQQ--VFYCFSAPRGNETSVLFQR
.:.. . : .: : : .. . .. .. :.... : :: .: .. .:.. .
CCDS32 NEEAVQINPKCFYTPKCHQDRNDLLNSALDIKEFFDHKNGTPFSCFYSPASQSEDVILIK
150 160 170 180 190 200
160 170 180 190
pF1KB6 LYGPQALLFSLFWPTFLLTGGLLIIAMVKSNQYLSILAAQK
: .:.. ::::.. : :: ::..::. .:.::.:
CCDS32 KYDQMAIFHCLFWPSLTLLGGALIVGMVRLTQHLSLLCEKYSTVVRDEVGGKVPYIEQHQ
210 220 230 240 250 260
CCDS32 FKLCIMRRSKGRAEKS
270
191 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 14:56:36 2016 done: Fri Nov 4 14:56:36 2016
Total Scan time: 1.880 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]