FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6841, 172 aa
  1>>>pF1KB6841 172 - 172 aa - 172 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1827+/-0.000576; mu= 15.3245+/- 0.035
 mean_var=89.3763+/-17.939, 0's: 0 Z-trim(115.0): 45  B-trim: 0 in 0/52
 Lambda= 0.135664
 statistics sampled from 15509 (15554) to 15509 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.82), E-opt: 0.2 (0.478), width:  16
 Scan time:  2.160

The best scores are:                                      opt bits E(32554)
CCDS31894.2 ASCL4 gene_id:121549|Hs108|chr12       ( 173) 1179 239.3   9e-64
CCDS59202.1 ASCL5 gene_id:647219|Hs108|chr1        ( 206)  349 76.9 8.1e-15
CCDS7795.1 ASCL3 gene_id:56676|Hs108|chr11         ( 181)  308 68.8 1.9e-12


>>CCDS31894.2 ASCL4 gene_id:121549|Hs108|chr12            (173 aa)
 initn: 1179 init1: 1179 opt: 1179  Z-score: 1258.4  bits: 239.3 E(32554): 9e-64
Smith-Waterman score: 1179; 100.0% identity (100.0% similar) in 172 aa overlap (1-172:2-173)

                10        20        30        40        50         
pF1KB6  METRKPAERLALPYSLRTAPLGVPGTLPGLPRRDPLRVALRLDAACWEWARSGCARGWQ
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MMETRKPAERLALPYSLRTAPLGVPGTLPGLPRRDPLRVALRLDAACWEWARSGCARGWQ
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB6 YLPVPLDSAFEPAFLRKRNERERQRVRCVNEGYARLRDHLPRELADKRLSKVETLRAAID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 YLPVPLDSAFEPAFLRKRNERERQRVRCVNEGYARLRDHLPRELADKRLSKVETLRAAID
               70        80        90       100       110       120

     120       130       140       150       160       170  
pF1KB6 YIKHLQELLERQAWGLEGAAGAVPQRRAECNSDGESKASSAPSPSSEPEEGGS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 YIKHLQELLERQAWGLEGAAGAVPQRRAECNSDGESKASSAPSPSSEPEEGGS
              130       140       150       160       170   

>>CCDS59202.1 ASCL5 gene_id:647219|Hs108|chr1             (206 aa)
 initn: 370 init1: 330 opt: 349  Z-score: 379.5  bits: 76.9 E(32554): 8.1e-15
Smith-Waterman score: 364; 45.1% identity (58.2% similar) in 182 aa overlap (4-165:12-187)

                       10        20        30         40        50 
pF1KB6         METRKPAERLALPYSLRTAPLGVPGTLPGLPRRDPL-RVALRLDAACWEWAR
                  :.:   :. :  .. . .  :   : ::  .::  : . :  .  :   
CCDS59 MNNNFCRALVDRRP---LGPPSCMQLGVMPPPRQAP-LPPAEPLGNVPFLLYPGPAEPPY
               10           20        30         40        50      

               60             70        80        90       100     
pF1KB6 SGCARG-WQYLPVP-----LDSAFEPAFLRKRNERERQRVRCVNEGYARLRDHLPRELAD
            : . :.: :      .  :::::..::::::::::.:::::::::: :::  ::.
CCDS59 YDAYAGVFPYVPFPGAFGVYEYPFEPAFIQKRNERERQRVKCVNEGYARLRGHLPGALAE
         60        70        80        90       100       110      

         110       120       130                    140       150  
pF1KB6 KRLSKVETLRAAIDYIKHLQELLERQ--------AWGLEG-----AAGAVPQRRAECNSD
       ::::::::::::: :::.:::::           . :: :     :  :.:  : .  .:
CCDS59 KRLSKVETLRAAIRYIKYLQELLSSAPDGSTPPASRGLPGTGPCPAPPATP--RPDRPGD
        120       130       140       150       160         170    

            160       170              
pF1KB6 GESKASSAPSPSSEPEEGGS            
       ::..: :.  : :                   
CCDS59 GEARAPSSLVPESSESSCFSPSPFLESEESWH
          180       190       200      

>>CCDS7795.1 ASCL3 gene_id:56676|Hs108|chr11              (181 aa)
 initn: 300 init1: 300 opt: 308  Z-score: 336.8  bits: 68.8 E(32554): 1.9e-12
Smith-Waterman score: 308; 47.3% identity (61.2% similar) in 129 aa overlap (9-128:22-149)

                            10        20        30        40       
pF1KB6              METRKPAERLALPYSLRTAPLGVPGTLPGLPRRDPLRVAL-RL----
                            :: :  :.   :. .  . :  :  .:    : ::    
CCDS77 MMDNRGNSSLPDKLPIFPDSARLPLTRSFYLEPMVTFHVHPEAPVSSPYSEELPRLPFPS
               10        20        30        40        50        60

             50        60            70        80        90        
pF1KB6 DAACWEWARSGCARGWQYLPVP----LDSAFEPAFLRKRNERERQRVRCVNEGYARLRDH
       :.         :  ..  .: :     . .. ::: :::::::::::.:::::::.:: :
CCDS77 DSLILGNYSEPCPFSFP-MPYPNYRGCEYSYGPAFTRKRNERERQRVKCVNEGYAQLRHH
               70         80        90       100       110         

      100       110       120       130       140       150        
pF1KB6 LPRELADKRLSKVETLRAAIDYIKHLQELLERQAWGLEGAAGAVPQRRAECNSDGESKAS
       ::.:  .::::::::::::: ::..:: ::                              
CCDS77 LPEEYLEKRLSKVETLRAAIKYINYLQSLLYPDKAETKNNPGKVSSMIATTSHHADPMFR
     120       130       140       150       160       170         




172 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:18:46 2016 done: Sat Nov  5 18:18:46 2016
 Total Scan time:  2.160 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]