FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB6843, 175 aa 1>>>pF1KB6843 175 - 175 aa - 175 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1979+/-0.000598; mu= 12.9873+/- 0.036 mean_var=58.1162+/-11.550, 0's: 0 Z-trim(111.2): 6 B-trim: 0 in 0/50 Lambda= 0.168239 statistics sampled from 12217 (12218) to 12217 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.755), E-opt: 0.2 (0.375), width: 16 Scan time: 1.830 The best scores are: opt bits E(32554) CCDS31412.1 MRPL17 gene_id:63875|Hs108|chr11 ( 175) 1170 291.5 1.8e-79 >>CCDS31412.1 MRPL17 gene_id:63875|Hs108|chr11 (175 aa) initn: 1170 init1: 1170 opt: 1170 Z-score: 1540.1 bits: 291.5 E(32554): 1.8e-79 Smith-Waterman score: 1170; 100.0% identity (100.0% similar) in 175 aa overlap (1-175:1-175) 10 20 30 40 50 60 pF1KB6 MRLSVAAAISHGRVFRRMGLGPESRIHLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 MRLSVAAAISHGRVFRRMGLGPESRIHLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 DYGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYKDQTGGYTRMLQIPNRSLDRAKM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 DYGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYKDQTGGYTRMLQIPNRSLDRAKM 70 80 90 100 110 120 130 140 150 160 170 pF1KB6 AVIEYKGNCLPPLPLPRRDSHLTLLNQLLQGLRQDLRQSQEASNHSSHTAQTPGI ::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 AVIEYKGNCLPPLPLPRRDSHLTLLNQLLQGLRQDLRQSQEASNHSSHTAQTPGI 130 140 150 160 170 175 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 00:22:42 2016 done: Sat Nov 5 00:22:42 2016 Total Scan time: 1.830 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]