FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6846, 193 aa
  1>>>pF1KB6846 193 - 193 aa - 193 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1041+/-0.000289; mu= 14.1874+/- 0.018
 mean_var=62.2428+/-12.647, 0's: 0 Z-trim(118.1): 20  B-trim: 54 in 1/50
 Lambda= 0.162566
 statistics sampled from 30631 (30651) to 30631 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.359), width:  16
 Scan time:  6.350

The best scores are:                                      opt bits E(85289)
NP_000790 (OMIM: 133170,612623) erythropoietin pre ( 193) 1280 308.1 5.8e-84


>>NP_000790 (OMIM: 133170,612623) erythropoietin precurs  (193 aa)
 initn: 1280 init1: 1280 opt: 1280  Z-score: 1628.4  bits: 308.1 E(85289): 5.8e-84
Smith-Waterman score: 1280; 100.0% identity (100.0% similar) in 193 aa overlap (1-193:1-193)

               10        20        30        40        50        60
pF1KB6 MGVHECPAWLWLLLSLLSLPLGLPVLGAPPRLICDSRVLERYLLEAKEAENITTGCAEHC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MGVHECPAWLWLLLSLLSLPLGLPVLGAPPRLICDSRVLERYLLEAKEAENITTGCAEHC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SLNENITVPDTKVNFYAWKRMEVGQQAVEVWQGLALLSEAVLRGQALLVNSSQPWEPLQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 SLNENITVPDTKVNFYAWKRMEVGQQAVEVWQGLALLSEAVLRGQALLVNSSQPWEPLQL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 HVDKAVSGLRSLTTLLRALGAQKEAISPPDAASAAPLRTITADTFRKLFRVYSNFLRGKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 HVDKAVSGLRSLTTLLRALGAQKEAISPPDAASAAPLRTITADTFRKLFRVYSNFLRGKL
              130       140       150       160       170       180

              190   
pF1KB6 KLYTGEACRTGDR
       :::::::::::::
NP_000 KLYTGEACRTGDR
              190   




193 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:29:02 2016 done: Sat Nov  5 00:29:03 2016
 Total Scan time:  6.350 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]