FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6847, 176 aa
  1>>>pF1KB6847 176 - 176 aa - 176 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9666+/-0.000724; mu= 14.2544+/- 0.043
 mean_var=56.5461+/-11.288, 0's: 0 Z-trim(108.1): 12  B-trim: 0 in 0/49
 Lambda= 0.170558
 statistics sampled from 10004 (10005) to 10004 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.697), E-opt: 0.2 (0.307), width:  16
 Scan time:  1.310

The best scores are:                                      opt bits E(32554)
CCDS12367.1 RPL18A gene_id:6142|Hs108|chr19        ( 176) 1222 308.3 1.6e-84


>>CCDS12367.1 RPL18A gene_id:6142|Hs108|chr19             (176 aa)
 initn: 1222 init1: 1222 opt: 1222  Z-score: 1631.2  bits: 308.3 E(32554): 1.6e-84
Smith-Waterman score: 1222; 100.0% identity (100.0% similar) in 176 aa overlap (1-176:1-176)

               10        20        30        40        50        60
pF1KB6 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR
               70        80        90       100       110       120

              130       140       150       160       170      
pF1KB6 AHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF
              130       140       150       160       170      




176 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:19:15 2016 done: Fri Nov  4 14:19:15 2016
 Total Scan time:  1.310 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]