FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6847, 176 aa
  1>>>pF1KB6847 176 - 176 aa - 176 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.4344+/-0.000332; mu= 17.3011+/- 0.021
 mean_var=54.1216+/-11.230, 0's: 0 Z-trim(115.0): 17  B-trim: 902 in 1/53
 Lambda= 0.174337
 statistics sampled from 25106 (25109) to 25106 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.294), width:  16
 Scan time:  5.400

The best scores are:                                      opt bits E(85289)
NP_000971 (OMIM: 604178) 60S ribosomal protein L18 ( 176) 1222 314.7 4.7e-86


>>NP_000971 (OMIM: 604178) 60S ribosomal protein L18a [H  (176 aa)
 initn: 1222 init1: 1222 opt: 1222  Z-score: 1665.9  bits: 314.7 E(85289): 4.7e-86
Smith-Waterman score: 1222; 100.0% identity (100.0% similar) in 176 aa overlap (1-176:1-176)

               10        20        30        40        50        60
pF1KB6 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR
               70        80        90       100       110       120

              130       140       150       160       170      
pF1KB6 AHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 AHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF
              130       140       150       160       170      




176 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:19:15 2016 done: Fri Nov  4 14:19:16 2016
 Total Scan time:  5.400 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]