FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6848, 194 aa
  1>>>pF1KB6848 194 - 194 aa - 194 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2584+/-0.000686; mu= 14.8031+/- 0.041
 mean_var=80.3624+/-16.148, 0's: 0 Z-trim(111.3): 11  B-trim: 0 in 0/51
 Lambda= 0.143070
 statistics sampled from 12303 (12305) to 12303 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.746), E-opt: 0.2 (0.378), width:  16
 Scan time:  1.480

The best scores are:                                      opt bits E(32554)
CCDS11241.1 RPL23A gene_id:6147|Hs108|chr17        ( 156)  948 204.3 3.2e-53


>>CCDS11241.1 RPL23A gene_id:6147|Hs108|chr17             (156 aa)
 initn: 948 init1: 948 opt: 948  Z-score: 1069.0  bits: 204.3 E(32554): 3.2e-53
Smith-Waterman score: 948; 100.0% identity (100.0% similar) in 148 aa overlap (47-194:9-156)

         20        30        40        50        60        70      
pF1KB6 VPSALTIFLLVHVQPGYITRPSLRSVVLRWAPAPPKAEAKAKALKAKKAVLKGVHSHKKK
                                     ::::::::::::::::::::::::::::::
CCDS11                       MAPKAKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKK
                                     10        20        30        

         80        90       100       110       120       130      
pF1KB6 KIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVF
       40        50        60        70        80        90        

        140       150       160       170       180       190    
pF1KB6 IVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII
      100       110       120       130       140       150      




194 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:13:02 2016 done: Sat Nov  5 14:13:02 2016
 Total Scan time:  1.480 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]