FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6849, 177 aa
  1>>>pF1KB6849 177 - 177 aa - 177 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1463+/-0.000865; mu= 7.9178+/- 0.052
 mean_var=60.3207+/-11.845, 0's: 0 Z-trim(104.6): 20  B-trim: 0 in 0/51
 Lambda= 0.165136
 statistics sampled from 7954 (7972) to 7954 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.631), E-opt: 0.2 (0.245), width:  16
 Scan time:  1.750

The best scores are:                                      opt bits E(32554)
CCDS43393.1 FABP6 gene_id:2172|Hs108|chr5          ( 177) 1146 281.4 2.1e-76
CCDS4349.1 FABP6 gene_id:2172|Hs108|chr5           ( 128)  827 205.4 1.1e-53
CCDS2001.1 FABP1 gene_id:2168|Hs108|chr2           ( 127)  337 88.6 1.5e-18


>>CCDS43393.1 FABP6 gene_id:2172|Hs108|chr5               (177 aa)
 initn: 1146 init1: 1146 opt: 1146  Z-score: 1485.4  bits: 281.4 E(32554): 2.1e-76
Smith-Waterman score: 1146; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:1-177)

               10        20        30        40        50        60
pF1KB6 MKTVTMMMVVEMQALTQVLRAVLSACTWVSRKGDLQRMKQTHKGKPPSSMAFTGKFEMES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MKTVTMMMVVEMQALTQVLRAVLSACTWVSRKGDLQRMKQTHKGKPPSSMAFTGKFEMES
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EKNYDEFMKLLGISSDVIEKARNFKIVTEVQQDGQDFTWSQHYSGGHTMTNKFTVGKESN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EKNYDEFMKLLGISSDVIEKARNFKIVTEVQQDGQDFTWSQHYSGGHTMTNKFTVGKESN
               70        80        90       100       110       120

              130       140       150       160       170       
pF1KB6 IQTMGGKTFKATVQMEGGKLVVNFPNYHQTSEIVGDKLVEVSTIGGVTYERVSKRLA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IQTMGGKTFKATVQMEGGKLVVNFPNYHQTSEIVGDKLVEVSTIGGVTYERVSKRLA
              130       140       150       160       170       

>>CCDS4349.1 FABP6 gene_id:2172|Hs108|chr5                (128 aa)
 initn: 827 init1: 827 opt: 827  Z-score: 1077.2  bits: 205.4 E(32554): 1.1e-53
Smith-Waterman score: 827; 100.0% identity (100.0% similar) in 128 aa overlap (50-177:1-128)

      20        30        40        50        60        70         
pF1KB6 RAVLSACTWVSRKGDLQRMKQTHKGKPPSSMAFTGKFEMESEKNYDEFMKLLGISSDVIE
                                     ::::::::::::::::::::::::::::::
CCDS43                               MAFTGKFEMESEKNYDEFMKLLGISSDVIE
                                             10        20        30

      80        90       100       110       120       130         
pF1KB6 KARNFKIVTEVQQDGQDFTWSQHYSGGHTMTNKFTVGKESNIQTMGGKTFKATVQMEGGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KARNFKIVTEVQQDGQDFTWSQHYSGGHTMTNKFTVGKESNIQTMGGKTFKATVQMEGGK
               40        50        60        70        80        90

     140       150       160       170       
pF1KB6 LVVNFPNYHQTSEIVGDKLVEVSTIGGVTYERVSKRLA
       ::::::::::::::::::::::::::::::::::::::
CCDS43 LVVNFPNYHQTSEIVGDKLVEVSTIGGVTYERVSKRLA
              100       110       120        

>>CCDS2001.1 FABP1 gene_id:2168|Hs108|chr2                (127 aa)
 initn: 322 init1: 139 opt: 337  Z-score: 446.3  bits: 88.6 E(32554): 1.5e-18
Smith-Waterman score: 337; 36.7% identity (82.0% similar) in 128 aa overlap (50-176:1-127)

      20        30        40        50        60        70         
pF1KB6 RAVLSACTWVSRKGDLQRMKQTHKGKPPSSMAFTGKFEMESEKNYDEFMKLLGISSDVIE
                                     :.:.::....:..:.. ::: .:.  ..:.
CCDS20                               MSFSGKYQLQSQENFEAFMKAIGLPEELIQ
                                             10        20        30

      80        90       100       110       120       130         
pF1KB6 KARNFKIVTEVQQDGQDFTWSQHYSGGHTMTNKFTVGKESNIQTMGGKTFKATVQMEG-G
       :....: :.:. :.:. : ..   .:.... :.::::.: ...:: :.  :..::.:: .
CCDS20 KGKDIKGVSEIVQNGKHFKFTIT-AGSKVIQNEFTVGEECELETMTGEKVKTVVQLEGDN
               40        50         60        70        80         

      140       150       160       170       
pF1KB6 KLVVNFPNYHQTSEIVGDKLVEVSTIGGVTYERVSKRLA
       :::..: : ....:. :: .... :.: ....:.:::. 
CCDS20 KLVTTFKNIKSVTELNGDIITNTMTLGDIVFKRISKRI 
      90       100       110       120        




177 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:03:38 2016 done: Fri Nov  4 15:03:39 2016
 Total Scan time:  1.750 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]