Result of FASTA (omim) for
pF1KB6849
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6849, 177 aa
1>>>pF1KB6849 177 - 177 aa - 177 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6119+/-0.000389; mu= 10.9357+/- 0.024
mean_var=60.8350+/-12.134, 0's: 0 Z-trim(111.5): 22 B-trim: 0 in 0/53
Lambda= 0.164436
statistics sampled from 20070 (20091) to 20070 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.622), E-opt: 0.2 (0.236), width: 16
Scan time: 5.150
The best scores are: opt bits E(85289)
NP_001035532 (OMIM: 600422) gastrotropin isoform 1 ( 177) 1146 280.2 1.2e-75
NP_001124430 (OMIM: 600422) gastrotropin isoform 1 ( 177) 1146 280.2 1.2e-75
NP_001436 (OMIM: 600422) gastrotropin isoform 2 [H ( 128) 827 204.5 5.2e-53
NP_001434 (OMIM: 134650) fatty acid-binding protei ( 127) 337 88.3 5.1e-18
NP_000125 (OMIM: 134640) fatty acid-binding protei ( 132) 169 48.4 5.3e-06
NP_004093 (OMIM: 134651) fatty acid-binding protei ( 133) 155 45.1 5.3e-05
XP_011539309 (OMIM: 134651) PREDICTED: fatty acid- ( 126) 148 43.4 0.00016
NP_001433 (OMIM: 600434) fatty acid-binding protei ( 132) 134 40.1 0.0017
NP_004155 (OMIM: 180280) retinol-binding protein 2 ( 134) 130 39.2 0.0033
NP_001869 (OMIM: 180231) cellular retinoic acid-bi ( 138) 126 38.2 0.0065
XP_016855832 (OMIM: 180231) PREDICTED: cellular re ( 138) 126 38.2 0.0065
NP_001186652 (OMIM: 180231) cellular retinoic acid ( 138) 126 38.2 0.0065
NP_001437 (OMIM: 602965) fatty acid-binding protei ( 132) 125 38.0 0.0073
>>NP_001035532 (OMIM: 600422) gastrotropin isoform 1 [Ho (177 aa)
initn: 1146 init1: 1146 opt: 1146 Z-score: 1479.3 bits: 280.2 E(85289): 1.2e-75
Smith-Waterman score: 1146; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:1-177)
10 20 30 40 50 60
pF1KB6 MKTVTMMMVVEMQALTQVLRAVLSACTWVSRKGDLQRMKQTHKGKPPSSMAFTGKFEMES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKTVTMMMVVEMQALTQVLRAVLSACTWVSRKGDLQRMKQTHKGKPPSSMAFTGKFEMES
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 EKNYDEFMKLLGISSDVIEKARNFKIVTEVQQDGQDFTWSQHYSGGHTMTNKFTVGKESN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKNYDEFMKLLGISSDVIEKARNFKIVTEVQQDGQDFTWSQHYSGGHTMTNKFTVGKESN
70 80 90 100 110 120
130 140 150 160 170
pF1KB6 IQTMGGKTFKATVQMEGGKLVVNFPNYHQTSEIVGDKLVEVSTIGGVTYERVSKRLA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQTMGGKTFKATVQMEGGKLVVNFPNYHQTSEIVGDKLVEVSTIGGVTYERVSKRLA
130 140 150 160 170
>>NP_001124430 (OMIM: 600422) gastrotropin isoform 1 [Ho (177 aa)
initn: 1146 init1: 1146 opt: 1146 Z-score: 1479.3 bits: 280.2 E(85289): 1.2e-75
Smith-Waterman score: 1146; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:1-177)
10 20 30 40 50 60
pF1KB6 MKTVTMMMVVEMQALTQVLRAVLSACTWVSRKGDLQRMKQTHKGKPPSSMAFTGKFEMES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKTVTMMMVVEMQALTQVLRAVLSACTWVSRKGDLQRMKQTHKGKPPSSMAFTGKFEMES
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 EKNYDEFMKLLGISSDVIEKARNFKIVTEVQQDGQDFTWSQHYSGGHTMTNKFTVGKESN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKNYDEFMKLLGISSDVIEKARNFKIVTEVQQDGQDFTWSQHYSGGHTMTNKFTVGKESN
70 80 90 100 110 120
130 140 150 160 170
pF1KB6 IQTMGGKTFKATVQMEGGKLVVNFPNYHQTSEIVGDKLVEVSTIGGVTYERVSKRLA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQTMGGKTFKATVQMEGGKLVVNFPNYHQTSEIVGDKLVEVSTIGGVTYERVSKRLA
130 140 150 160 170
>>NP_001436 (OMIM: 600422) gastrotropin isoform 2 [Homo (128 aa)
initn: 827 init1: 827 opt: 827 Z-score: 1072.6 bits: 204.5 E(85289): 5.2e-53
Smith-Waterman score: 827; 100.0% identity (100.0% similar) in 128 aa overlap (50-177:1-128)
20 30 40 50 60 70
pF1KB6 RAVLSACTWVSRKGDLQRMKQTHKGKPPSSMAFTGKFEMESEKNYDEFMKLLGISSDVIE
::::::::::::::::::::::::::::::
NP_001 MAFTGKFEMESEKNYDEFMKLLGISSDVIE
10 20 30
80 90 100 110 120 130
pF1KB6 KARNFKIVTEVQQDGQDFTWSQHYSGGHTMTNKFTVGKESNIQTMGGKTFKATVQMEGGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KARNFKIVTEVQQDGQDFTWSQHYSGGHTMTNKFTVGKESNIQTMGGKTFKATVQMEGGK
40 50 60 70 80 90
140 150 160 170
pF1KB6 LVVNFPNYHQTSEIVGDKLVEVSTIGGVTYERVSKRLA
::::::::::::::::::::::::::::::::::::::
NP_001 LVVNFPNYHQTSEIVGDKLVEVSTIGGVTYERVSKRLA
100 110 120
>>NP_001434 (OMIM: 134650) fatty acid-binding protein, l (127 aa)
initn: 322 init1: 139 opt: 337 Z-score: 444.5 bits: 88.3 E(85289): 5.1e-18
Smith-Waterman score: 337; 36.7% identity (82.0% similar) in 128 aa overlap (50-176:1-127)
20 30 40 50 60 70
pF1KB6 RAVLSACTWVSRKGDLQRMKQTHKGKPPSSMAFTGKFEMESEKNYDEFMKLLGISSDVIE
:.:.::....:..:.. ::: .:. ..:.
NP_001 MSFSGKYQLQSQENFEAFMKAIGLPEELIQ
10 20 30
80 90 100 110 120 130
pF1KB6 KARNFKIVTEVQQDGQDFTWSQHYSGGHTMTNKFTVGKESNIQTMGGKTFKATVQMEG-G
:....: :.:. :.:. : .. .:.... :.::::.: ...:: :. :..::.:: .
NP_001 KGKDIKGVSEIVQNGKHFKFTIT-AGSKVIQNEFTVGEECELETMTGEKVKTVVQLEGDN
40 50 60 70 80
140 150 160 170
pF1KB6 KLVVNFPNYHQTSEIVGDKLVEVSTIGGVTYERVSKRLA
:::..: : ....:. :: .... :.: ....:.:::.
NP_001 KLVTTFKNIKSVTELNGDIITNTMTLGDIVFKRISKRI
90 100 110 120
>>NP_000125 (OMIM: 134640) fatty acid-binding protein, i (132 aa)
initn: 181 init1: 87 opt: 169 Z-score: 228.8 bits: 48.4 E(85289): 5.3e-06
Smith-Waterman score: 169; 26.1% identity (61.2% similar) in 134 aa overlap (50-175:1-131)
20 30 40 50 60 70
pF1KB6 RAVLSACTWVSRKGDLQRMKQTHKGKPPSSMAFTGKFEMESEKNYDEFMKLLGISSDVIE
::: . .... .:::.::. .:. ....
NP_000 MAFDSTWKVDRSENYDKFMEKMGV--NIVK
10 20
80 90 100 110 120 130
pF1KB6 K--ARNFKIVTEVQQDGQDFTWSQHYSGGHTMTNKFTVGKESNIQTMGGKTFKATVQMEG
. : . .. . :.:. :: .. : ... : .: : . : ...: ..::
NP_000 RKLAAHDNLKLTITQEGNKFT-VKESSTFRNIEVVFELGVTFNYNLADGTELRGTWSLEG
30 40 50 60 70 80
140 150 160 170
pF1KB6 GKLVVNFP------NYHQTSEIVGDKLVEVSTIGGVTYERVSKRLA
.::. .: . . . ::.::.::.. . :: .:. :.
NP_000 NKLIGKFKRTDNGNELNTVREIIGDELVQTYVYEGVEAKRIFKKD
90 100 110 120 130
>>NP_004093 (OMIM: 134651) fatty acid-binding protein, h (133 aa)
initn: 142 init1: 78 opt: 155 Z-score: 210.8 bits: 45.1 E(85289): 5.3e-05
Smith-Waterman score: 155; 27.5% identity (60.3% similar) in 131 aa overlap (51-177:4-133)
30 40 50 60 70 80
pF1KB6 AVLSACTWVSRKGDLQRMKQTHKGKPPSSMAFTGKFEMESEKNYDEFMKLLGISSDVIEK
:: : ... . ::.:..:: ::.. . .
NP_004 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQV
10 20 30
90 100 110 120 130 140
pF1KB6 ARNFKIVTEVQQDGQDFTWSQHYSGGHTMTNKFTVGKESNIQTMGGKTFKATVQMEGGKL
: : .: ....:. .: . : . .: . : .: : . : . :. : ..::::
NP_004 ASMTKPTTIIEKNGDILTLKTHSTFKNTEIS-FKLGVEFDETTADDRKVKSIVTLDGGKL
40 50 60 70 80 90
150 160 170
pF1KB6 V-VNFPNYHQTS---EIVGDKLVEVSTIGGVTYERVSKRLA
: .. . ..:. :.. ::. . : : .. :. .. :
NP_004 VHLQKWDGQETTLVRELIDGKLILTLTHGTAVCTRTYEKEA
100 110 120 130
>>XP_011539309 (OMIM: 134651) PREDICTED: fatty acid-bind (126 aa)
initn: 141 init1: 78 opt: 148 Z-score: 202.2 bits: 43.4 E(85289): 0.00016
Smith-Waterman score: 148; 30.8% identity (61.5% similar) in 91 aa overlap (51-141:4-93)
30 40 50 60 70 80
pF1KB6 AVLSACTWVSRKGDLQRMKQTHKGKPPSSMAFTGKFEMESEKNYDEFMKLLGISSDVIEK
:: : ... . ::.:..:: ::.. . .
XP_011 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQV
10 20 30
90 100 110 120 130 140
pF1KB6 ARNFKIVTEVQQDGQDFTWSQHYSGGHTMTNKFTVGKESNIQTMGGKTFKATVQMEGGKL
: : .: ....:. .: . : . .: . : .: : . : . :. : ..::::
XP_011 ASMTKPTTIIEKNGDILTLKTHSTFKNTEIS-FKLGVEFDETTADDRKVKSIVTLDGGKL
40 50 60 70 80 90
150 160 170
pF1KB6 VVNFPNYHQTSEIVGDKLVEVSTIGGVTYERVSKRLA
:
XP_011 VHLQKWDGQETTLVRELIDGKLILMEKLQLRNVK
100 110 120
>>NP_001433 (OMIM: 600434) fatty acid-binding protein, a (132 aa)
initn: 82 init1: 50 opt: 134 Z-score: 183.9 bits: 40.1 E(85289): 0.0017
Smith-Waterman score: 134; 26.2% identity (57.7% similar) in 130 aa overlap (51-175:4-131)
30 40 50 60 70 80
pF1KB6 AVLSACTWVSRKGDLQRMKQTHKGKPPSSMAFTGKFEMESEKNYDEFMKLLGISSDVIEK
::.: ... : .:.:..:: .:.. . .
NP_001 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKV
10 20 30
90 100 110 120 130 140
pF1KB6 ARNFKIVTEVQQDGQDFTWSQHYSGGHTMTNKFTVGKESNIQTMGGKTFKATVQMEGGKL
: : .. .:. .: ... . .: . : .:.: . : . :.:. ..:: .
NP_001 AGMAKPNMIISVNGDVITIKSESTFKNTEIS-FILGQEFDEVTADDRKVKSTITLDGG-V
40 50 60 70 80 90
150 160 170
pF1KB6 VVNFPNYHQTSEIV-----GDKLVEVSTIGGVTYERVSKRLA
.:. .. : . :::: .. ::: :: .:
NP_001 LVHVQKWDGKSTTIKRKREDDKLVVECVMKGVTSTRVYERA
100 110 120 130
>>NP_004155 (OMIM: 180280) retinol-binding protein 2 [Ho (134 aa)
initn: 134 init1: 79 opt: 130 Z-score: 178.7 bits: 39.2 E(85289): 0.0033
Smith-Waterman score: 130; 29.7% identity (54.7% similar) in 128 aa overlap (54-175:7-133)
30 40 50 60 70 80
pF1KB6 SACTWVSRKGDLQRMKQTHKGKPPSSMAFTGKFEMESEKNYDEFMKLLGISSDVIEKARN
: .::::..:.. .:: : :. . . :
NP_004 MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVR
10 20 30
90 100 110 120 130 140
pF1KB6 FKIVTEVQQDGQDFTWSQHYSGGHTMTNKFTVGKESN--IQTMGGKTFKATVQMEGGKLV
. . ..:::..: .. : ... :::: : . ... .. :: : :: ::
NP_004 LTQTKVIDQDGDNFK-TKTTSTFRNYDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLV
40 50 60 70 80 90
150 160 170
pF1KB6 V----NFPNYHQTSEIVGDKLVEVSTIGGVTYERVSKRLA
. : . : :::: : : . ..: :.
NP_004 CVQKGEKENRGWKQWIEGDKLYLELTCGDQVCRQVFKKK
100 110 120 130
>>NP_001869 (OMIM: 180231) cellular retinoic acid-bindin (138 aa)
initn: 51 init1: 51 opt: 126 Z-score: 173.3 bits: 38.2 E(85289): 0.0065
Smith-Waterman score: 133; 27.4% identity (59.3% similar) in 135 aa overlap (52-175:4-137)
30 40 50 60 70
pF1KB6 VLSACTWVSRKGDLQRMKQTHKGKPPSSMAFTGKFEMESEKNYDEFMKLLGISSDV--IE
:.:.... .:..:..:.::.. . :
NP_001 MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIA
10 20 30
80 90 100 110 120 130
pF1KB6 KARNFKIVTEVQQDGQDFTWSQHYSGGHTMTNKFTVGKESNIQTMGGKTFKATVQMEG-G
: : ..:..:.:. : . . . .: .: ::.: . ::. :. :. :. :. .
NP_001 VAAASKPAVEIKQEGDTF-YIKTSTTVRTTEINFKVGEEFEEQTVDGRPCKSLVKWESEN
40 50 60 70 80 90
140 150 160 170
pF1KB6 KLVVNF-------PNYHQTSEIVGD-KLVEVSTIGGVTYERVSKRLA
:.: . :. : :...: .:. . : :. :: :
NP_001 KMVCEQKLLKGEGPKTSWTRELTNDGELILTMTADDVVCTRVYVRE
100 110 120 130
177 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 15:03:39 2016 done: Fri Nov 4 15:03:40 2016
Total Scan time: 5.150 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]