FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6850, 194 aa
  1>>>pF1KB6850 194 - 194 aa - 194 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1333+/-0.000725; mu= 9.3265+/- 0.044
 mean_var=72.4196+/-14.175, 0's: 0 Z-trim(109.7): 8  B-trim: 0 in 0/51
 Lambda= 0.150711
 statistics sampled from 11036 (11039) to 11036 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.339), width:  16
 Scan time:  1.640

The best scores are:                                      opt bits E(32554)
CCDS44959.1 WASHC3 gene_id:51019|Hs108|chr12       ( 194) 1230 276.0   1e-74
CCDS73512.1 WASHC3 gene_id:51019|Hs108|chr12       ( 193) 1211 271.8 1.8e-73


>>CCDS44959.1 WASHC3 gene_id:51019|Hs108|chr12            (194 aa)
 initn: 1230 init1: 1230 opt: 1230  Z-score: 1454.9  bits: 276.0 E(32554): 1e-74
Smith-Waterman score: 1230; 100.0% identity (100.0% similar) in 194 aa overlap (1-194:1-194)

               10        20        30        40        50        60
pF1KB6 MDEDGLPLMGSGIDLTKVPAIQQKRTVAFLNQFVVHTVQFLNRFSTVCEEKLADLSLRIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MDEDGLPLMGSGIDLTKVPAIQQKRTVAFLNQFVVHTVQFLNRFSTVCEEKLADLSLRIQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QIETTLNILDAKLSSIPGLDDVTVEVSPLNVTSVTNGAHPEATSEQPQQNSTQDSGLQES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 QIETTLNILDAKLSSIPGLDDVTVEVSPLNVTSVTNGAHPEATSEQPQQNSTQDSGLQES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EVSAENILTVAKDPRYARYLKMVQVGVPVMAIRNKMISEGLDPDLLERPDAPVPDGESEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EVSAENILTVAKDPRYARYLKMVQVGVPVMAIRNKMISEGLDPDLLERPDAPVPDGESEK
              130       140       150       160       170       180

              190    
pF1KB6 TVEESSDSESSFSD
       ::::::::::::::
CCDS44 TVEESSDSESSFSD
              190    

>>CCDS73512.1 WASHC3 gene_id:51019|Hs108|chr12            (193 aa)
 initn: 710 init1: 686 opt: 1211  Z-score: 1432.6  bits: 271.8 E(32554): 1.8e-73
Smith-Waterman score: 1211; 99.5% identity (99.5% similar) in 194 aa overlap (1-194:1-193)

               10        20        30        40        50        60
pF1KB6 MDEDGLPLMGSGIDLTKVPAIQQKRTVAFLNQFVVHTVQFLNRFSTVCEEKLADLSLRIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MDEDGLPLMGSGIDLTKVPAIQQKRTVAFLNQFVVHTVQFLNRFSTVCEEKLADLSLRIQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QIETTLNILDAKLSSIPGLDDVTVEVSPLNVTSVTNGAHPEATSEQPQQNSTQDSGLQES
       :::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
CCDS73 QIETTLNILDAKLSSIPGLDDVTVEVSPLNVTSVTNGAHPEATSEQPQ-NSTQDSGLQES
               70        80        90       100        110         

              130       140       150       160       170       180
pF1KB6 EVSAENILTVAKDPRYARYLKMVQVGVPVMAIRNKMISEGLDPDLLERPDAPVPDGESEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EVSAENILTVAKDPRYARYLKMVQVGVPVMAIRNKMISEGLDPDLLERPDAPVPDGESEK
     120       130       140       150       160       170         

              190    
pF1KB6 TVEESSDSESSFSD
       ::::::::::::::
CCDS73 TVEESSDSESSFSD
     180       190   




194 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:56:27 2016 done: Sat Nov  5 20:56:27 2016
 Total Scan time:  1.640 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]