FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6851, 133 aa
  1>>>pF1KB6851 133 - 133 aa - 133 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1931+/-0.000631; mu= 11.3845+/- 0.038
 mean_var=58.0196+/-11.132, 0's: 0 Z-trim(110.8): 8  B-trim: 8 in 1/51
 Lambda= 0.168379
 statistics sampled from 11854 (11858) to 11854 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.364), width:  16
 Scan time:  1.530

The best scores are:                                      opt bits E(32554)
CCDS56541.1 IL7 gene_id:3574|Hs108|chr8            ( 133)  892 224.1 1.9e-59
CCDS75755.1 IL7 gene_id:3574|Hs108|chr8            ( 115)  522 134.2 1.9e-32
CCDS75756.1 IL7 gene_id:3574|Hs108|chr8            ( 159)  516 132.8   7e-32
CCDS6224.1 IL7 gene_id:3574|Hs108|chr8             ( 177)  516 132.9 7.7e-32


>>CCDS56541.1 IL7 gene_id:3574|Hs108|chr8                 (133 aa)
 initn: 892 init1: 892 opt: 892  Z-score: 1180.6  bits: 224.1 E(32554): 1.9e-59
Smith-Waterman score: 892; 100.0% identity (100.0% similar) in 133 aa overlap (1-133:1-133)

               10        20        30        40        50        60
pF1KB6 MFHVSFRYIFGLPPLILVLLPVASSDCDIEGKDGKQYESVLMVSIDQLLDSMKEIGSNCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MFHVSFRYIFGLPPLILVLLPVASSDCDIEGKDGKQYESVLMVSIDQLLDSMKEIGSNCL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 NNEFNFFKRHICDANKVKGRKPAALGEAQPTKSLEENKSLKEQKKLNDLCFLKRLLQEIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 NNEFNFFKRHICDANKVKGRKPAALGEAQPTKSLEENKSLKEQKKLNDLCFLKRLLQEIK
               70        80        90       100       110       120

              130   
pF1KB6 TCWNKILMGTKEH
       :::::::::::::
CCDS56 TCWNKILMGTKEH
              130   

>>CCDS75755.1 IL7 gene_id:3574|Hs108|chr8                 (115 aa)
 initn: 550 init1: 517 opt: 522  Z-score: 695.9  bits: 134.2 E(32554): 1.9e-32
Smith-Waterman score: 732; 86.5% identity (86.5% similar) in 133 aa overlap (1-133:1-115)

               10        20        30        40        50        60
pF1KB6 MFHVSFRYIFGLPPLILVLLPVASSDCDIEGKDGKQYESVLMVSIDQLLDSMKEIGSNCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MFHVSFRYIFGLPPLILVLLPVASSDCDIEGKDGKQYESVLMVSIDQLLDSMKEIGSNCL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 NNEFNFFKRHICDANKVKGRKPAALGEAQPTKSLEENKSLKEQKKLNDLCFLKRLLQEIK
       ::::::::::::::::                  ::::::::::::::::::::::::::
CCDS75 NNEFNFFKRHICDANK------------------EENKSLKEQKKLNDLCFLKRLLQEIK
               70                          80        90       100  

              130   
pF1KB6 TCWNKILMGTKEH
       :::::::::::::
CCDS75 TCWNKILMGTKEH
            110     

>>CCDS75756.1 IL7 gene_id:3574|Hs108|chr8                 (159 aa)
 initn: 764 init1: 516 opt: 516  Z-score: 685.8  bits: 132.8 E(32554): 7e-32
Smith-Waterman score: 711; 76.1% identity (78.6% similar) in 159 aa overlap (1-133:1-159)

               10        20        30        40        50        60
pF1KB6 MFHVSFRYIFGLPPLILVLLPVASSDCDIEGKDGKQYESVLMVSIDQLLDSMKEIGSNCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MFHVSFRYIFGLPPLILVLLPVASSDCDIEGKDGKQYESVLMVSIDQLLDSMKEIGSNCL
               10        20        30        40        50        60

               70                 80                   90          
pF1KB6 NNEFNFFKRHICDANKV---------KGR---KPAALGE--------AQPTKSL------
       ::::::::::::::::          : :   :  . :.        .. :  :      
CCDS75 NNEFNFFKRHICDANKEGMFLFRAARKLRQFLKMNSTGDFDLHLLKVSEGTTILLNCTGQ
               70        80        90       100       110       120

          100       110       120       130   
pF1KB6 EENKSLKEQKKLNDLCFLKRLLQEIKTCWNKILMGTKEH
       :::::::::::::::::::::::::::::::::::::::
CCDS75 EENKSLKEQKKLNDLCFLKRLLQEIKTCWNKILMGTKEH
              130       140       150         

>>CCDS6224.1 IL7 gene_id:3574|Hs108|chr8                  (177 aa)
 initn: 560 init1: 516 opt: 516  Z-score: 685.1  bits: 132.9 E(32554): 7.7e-32
Smith-Waterman score: 701; 73.3% identity (73.3% similar) in 165 aa overlap (1-121:1-165)

               10        20        30        40        50        60
pF1KB6 MFHVSFRYIFGLPPLILVLLPVASSDCDIEGKDGKQYESVLMVSIDQLLDSMKEIGSNCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MFHVSFRYIFGLPPLILVLLPVASSDCDIEGKDGKQYESVLMVSIDQLLDSMKEIGSNCL
               10        20        30        40        50        60

               70                                                  
pF1KB6 NNEFNFFKRHICDANK--------------------------------------------
       ::::::::::::::::                                            
CCDS62 NNEFNFFKRHICDANKEGMFLFRAARKLRQFLKMNSTGDFDLHLLKVSEGTTILLNCTGQ
               70        80        90       100       110       120

         80        90       100       110       120       130   
pF1KB6 VKGRKPAALGEAQPTKSLEENKSLKEQKKLNDLCFLKRLLQEIKTCWNKILMGTKEH
       :::::::::::::::::::::::::::::::::::::::::::::            
CCDS62 VKGRKPAALGEAQPTKSLEENKSLKEQKKLNDLCFLKRLLQEIKTCWNKILMGTKEH
              130       140       150       160       170       




133 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:27:51 2016 done: Sat Nov  5 20:27:51 2016
 Total Scan time:  1.530 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]