Result of FASTA (ccds) for
pF1KB6852
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6852, 194 aa
1>>>pF1KB6852 194 - 194 aa - 194 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.3748+/-0.000897; mu= 6.9190+/- 0.055
mean_var=164.0720+/-32.275, 0's: 0 Z-trim(112.5): 47 B-trim: 0 in 0/55
Lambda= 0.100128
statistics sampled from 13187 (13233) to 13187 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.406), width: 16
Scan time: 2.180
The best scores are: opt bits E(32554)
CCDS2390.1 MYL1 gene_id:4632|Hs108|chr2 ( 194) 1248 191.0 3.9e-49
CCDS2391.1 MYL1 gene_id:4632|Hs108|chr2 ( 150) 919 143.4 6.5e-35
CCDS11510.1 MYL4 gene_id:4635|Hs108|chr17 ( 197) 905 141.5 3.3e-34
CCDS2746.1 MYL3 gene_id:4634|Hs108|chr3 ( 195) 890 139.3 1.4e-33
CCDS8905.1 MYL6B gene_id:140465|Hs108|chr12 ( 208) 838 131.8 2.8e-31
CCDS8906.1 MYL6 gene_id:4637|Hs108|chr12 ( 151) 754 119.5 9.8e-28
CCDS31834.1 MYL6 gene_id:4637|Hs108|chr12 ( 151) 725 115.4 1.8e-26
CCDS7069.1 CALML3 gene_id:810|Hs108|chr10 ( 149) 404 69.0 1.6e-12
CCDS9892.1 CALM1 gene_id:801|Hs108|chr14 ( 149) 395 67.7 4e-12
CCDS1832.1 CALM2 gene_id:805|Hs108|chr2 ( 149) 395 67.7 4e-12
CCDS33061.1 CALM3 gene_id:808|Hs108|chr19 ( 149) 395 67.7 4e-12
>>CCDS2390.1 MYL1 gene_id:4632|Hs108|chr2 (194 aa)
initn: 1248 init1: 1248 opt: 1248 Z-score: 995.6 bits: 191.0 E(32554): 3.9e-49
Smith-Waterman score: 1248; 100.0% identity (100.0% similar) in 194 aa overlap (1-194:1-194)
10 20 30 40 50 60
pF1KB6 MAPKKDVKKPVAAAAAAPAPAPAPAPAPAPAKPKEEKIDLSAIKIEFSKEQQDEFKEAFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 MAPKKDVKKPVAAAAAAPAPAPAPAPAPAPAKPKEEKIDLSAIKIEFSKEQQDEFKEAFL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LFDRTGDSKITLSQVGDVLRALGTNPTNAEVRKVLGNPSNEELNAKKIEFEQFLPMMQAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 LFDRTGDSKITLSQVGDVLRALGTNPTNAEVRKVLGNPSNEELNAKKIEFEQFLPMMQAI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SNNKDQATYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMKEEEVEALMAGQEDSNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 SNNKDQATYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMKEEEVEALMAGQEDSNG
130 140 150 160 170 180
190
pF1KB6 CINYEAFVKHIMSI
::::::::::::::
CCDS23 CINYEAFVKHIMSI
190
>>CCDS2391.1 MYL1 gene_id:4632|Hs108|chr2 (150 aa)
initn: 919 init1: 919 opt: 919 Z-score: 740.2 bits: 143.4 E(32554): 6.5e-35
Smith-Waterman score: 919; 96.0% identity (97.3% similar) in 150 aa overlap (45-194:1-150)
20 30 40 50 60 70
pF1KB6 AAAPAPAPAPAPAPAPAKPKEEKIDLSAIKIEFSKEQQDEFKEAFLLFDRTGDSKITLSQ
. :: .: :::::::::::::::::::::
CCDS23 MSFSADQIAEFKEAFLLFDRTGDSKITLSQ
10 20 30
80 90 100 110 120 130
pF1KB6 VGDVLRALGTNPTNAEVRKVLGNPSNEELNAKKIEFEQFLPMMQAISNNKDQATYEDFVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 VGDVLRALGTNPTNAEVRKVLGNPSNEELNAKKIEFEQFLPMMQAISNNKDQATYEDFVE
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB6 GLRVFDKEGNGTVMGAELRHVLATLGEKMKEEEVEALMAGQEDSNGCINYEAFVKHIMSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 GLRVFDKEGNGTVMGAELRHVLATLGEKMKEEEVEALMAGQEDSNGCINYEAFVKHIMSI
100 110 120 130 140 150
>>CCDS11510.1 MYL4 gene_id:4635|Hs108|chr17 (197 aa)
initn: 721 init1: 721 opt: 905 Z-score: 727.7 bits: 141.5 E(32554): 3.3e-34
Smith-Waterman score: 905; 71.9% identity (85.2% similar) in 196 aa overlap (1-193:1-196)
10 20 30 40 50
pF1KB6 MAPKK-DVKKPVAAAAAAPAPAPAPAPAPAPAKPKEEKIDLSAIKIEFSKEQQDEFKEAF
::::: . :: .: : :::::::::::::: ::: .: ...::.:. .: .::::::
CCDS11 MAPKKPEPKKEAAKPAPAPAPAPAPAPAPAPEAPKEPAFDPKSVKIDFTADQIEEFKEAF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 LLFDRT--GDSKITLSQVGDVLRALGTNPTNAEVRKVLGNPSNEELNAKKIEFEQFLPMM
::::: :. ::: .: :::::::: ::::::: .:::.:. ::.:.: ..:: :::..
CCDS11 SLFDRTPTGEMKITYGQCGDVLRALGQNPTNAEVLRVLGKPKPEEMNVKMLDFETFLPIL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 QAISNNKDQATYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMKEEEVEALMAGQED
: :: ::.:.:::::::::::::::.:::::::::::::::::::: : ::: :.:::::
CCDS11 QHISRNKEQGTYEDFVEGLRVFDKESNGTVMGAELRHVLATLGEKMTEAEVEQLLAGQED
130 140 150 160 170 180
180 190
pF1KB6 SNGCINYEAFVKHIMSI
.:::::::::::::::
CCDS11 ANGCINYEAFVKHIMSG
190
>>CCDS2746.1 MYL3 gene_id:4634|Hs108|chr3 (195 aa)
initn: 706 init1: 706 opt: 890 Z-score: 716.1 bits: 139.3 E(32554): 1.4e-33
Smith-Waterman score: 890; 72.3% identity (83.1% similar) in 195 aa overlap (1-193:1-194)
10 20 30 40 50 60
pF1KB6 MAPKKDVKKPVAAAAAAPAPAPAPAPAPAPAKPKEEKIDLSAIKIEFSKEQQDEFKEAFL
::::: : : ::: :::::: : : .::: ..: : :::::. :: .::::::.
CCDS27 MAPKKPEPKK-DDAKAAPKAAPAPAPPPEPERPKEVEFDASKIKIEFTPEQIEEFKEAFM
10 20 30 40 50
70 80 90 100 110
pF1KB6 LFDRTG--DSKITLSQVGDVLRALGTNPTNAEVRKVLGNPSNEELNAKKIEFEQFLPMMQ
::::: . ::: .: :::::::: :::.::: .:::.: .::::.: ..:: ::::.:
CCDS27 LFDRTPKCEMKITYGQCGDVLRALGQNPTQAEVLRVLGKPRQEELNTKMMDFETFLPMLQ
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 AISNNKDQATYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMKEEEVEALMAGQEDS
::.::: .::::::::::::::::::::::::::::::::::.. :.::: ::::::::
CCDS27 HISKNKDTGTYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGERLTEDEVEKLMAGQEDS
120 130 140 150 160 170
180 190
pF1KB6 NGCINYEAFVKHIMSI
:::::::::::::::
CCDS27 NGCINYEAFVKHIMSS
180 190
>>CCDS8905.1 MYL6B gene_id:140465|Hs108|chr12 (208 aa)
initn: 1018 init1: 827 opt: 838 Z-score: 675.1 bits: 131.8 E(32554): 2.8e-31
Smith-Waterman score: 853; 62.5% identity (81.2% similar) in 208 aa overlap (1-194:1-208)
10 20 30 40
pF1KB6 MAPKKDV--KKPVAAAAAAPAPAPAPAPAP------------APAKPKEEKIDLSAIKIE
: ::::: :::.. . . :: :: : :: :: : .: .::: . ::
CCDS89 MPPKKDVPVKKPAGPSISKPAAKPAAAGAPPAKTKAEPAVPQAPQKTQEPPVDLSKVVIE
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB6 FSKEQQDEFKEAFLLFDRTGDSKITLSQVGDVLRALGTNPTNAEVRKVLGNPSNEELNAK
:.:.: .:::::: ::::.::.:: :: :::.:::: ::::::: ::::::...::...
CCDS89 FNKDQLEEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSR
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB6 KIEFEQFLPMMQAISNNKDQATYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMKEE
...:: ::::.::...:. :.::::..::.::::::::: ::::::::::.:::::: ::
CCDS89 RVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEE
130 140 150 160 170 180
170 180 190
pF1KB6 EVEALMAGQEDSNGCINYEAFVKHIMSI
:::...::.::::::::::::.:::.:.
CCDS89 EVETVLAGHEDSNGCINYEAFLKHILSV
190 200
>>CCDS8906.1 MYL6 gene_id:4637|Hs108|chr12 (151 aa)
initn: 817 init1: 735 opt: 754 Z-score: 611.4 bits: 119.5 E(32554): 9.8e-28
Smith-Waterman score: 754; 74.3% identity (92.6% similar) in 148 aa overlap (46-193:3-150)
20 30 40 50 60 70
pF1KB6 AAPAPAPAPAPAPAPAKPKEEKIDLSAIKIEFSKEQQDEFKEAFLLFDRTGDSKITLSQV
.:...: :::::: :::::::.:: ::
CCDS89 MCDFTEDQTAEFKEAFQLFDRTGDGKILYSQC
10 20 30
80 90 100 110 120 130
pF1KB6 GDVLRALGTNPTNAEVRKVLGNPSNEELNAKKIEFEQFLPMMQAISNNKDQATYEDFVEG
:::.:::: ::::::: ::::::...:.:.: ..::.::::.:....::::.::::.:::
CCDS89 GDVMRALGQNPTNAEVLKVLGNPKSDEMNVKVLDFEHFLPMLQTVAKNKDQGTYEDYVEG
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB6 LRVFDKEGNGTVMGAELRHVLATLGEKMKEEEVEALMAGQEDSNGCINYEAFVKHIMSI
::::::::::::::::.::::.:::::: ::::: :.::.:::::::::::::.::.:
CCDS89 LRVFDKEGNGTVMGAEIRHVLVTLGEKMTEEEVEMLVAGHEDSNGCINYEAFVRHILSG
100 110 120 130 140 150
>>CCDS31834.1 MYL6 gene_id:4637|Hs108|chr12 (151 aa)
initn: 788 init1: 706 opt: 725 Z-score: 588.7 bits: 115.4 E(32554): 1.8e-26
Smith-Waterman score: 725; 70.9% identity (91.2% similar) in 148 aa overlap (46-193:3-150)
20 30 40 50 60 70
pF1KB6 AAPAPAPAPAPAPAPAKPKEEKIDLSAIKIEFSKEQQDEFKEAFLLFDRTGDSKITLSQV
.:...: :::::: :::::::.:: ::
CCDS31 MCDFTEDQTAEFKEAFQLFDRTGDGKILYSQC
10 20 30
80 90 100 110 120 130
pF1KB6 GDVLRALGTNPTNAEVRKVLGNPSNEELNAKKIEFEQFLPMMQAISNNKDQATYEDFVEG
:::.:::: ::::::: ::::::...:.:.: ..::.::::.:....::::.::::.:::
CCDS31 GDVMRALGQNPTNAEVLKVLGNPKSDEMNVKVLDFEHFLPMLQTVAKNKDQGTYEDYVEG
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB6 LRVFDKEGNGTVMGAELRHVLATLGEKMKEEEVEALMAGQEDSNGCINYEAFVKHIMSI
::::::::::::::::.::::.:::::: ::::: :.::.:::::::::: .:. ...
CCDS31 LRVFDKEGNGTVMGAEIRHVLVTLGEKMTEEEVEMLVAGHEDSNGCINYEELVRMVLNG
100 110 120 130 140 150
>>CCDS7069.1 CALML3 gene_id:810|Hs108|chr10 (149 aa)
initn: 462 init1: 174 opt: 404 Z-score: 338.2 bits: 69.0 E(32554): 1.6e-12
Smith-Waterman score: 404; 44.3% identity (75.2% similar) in 149 aa overlap (46-193:4-148)
20 30 40 50 60 70
pF1KB6 AAPAPAPAPAPAPAPAKPKEEKIDLSAIKIEFSKEQQDEFKEAFLLFDRTGDSKITLSQV
....:: :::::: :::. ::. :: ..
CCDS70 MADQLTEEQVTEFKEAFSLFDKDGDGCITTREL
10 20 30
80 90 100 110 120 130
pF1KB6 GDVLRALGTNPTNAEVRKVLGNPSNEELNAKKIEFEQFLPMMQAISNNKDQATYEDFVEG
: :.:.:: :::.::.: .... . . . ..: .:: :: . :: . :.. :.
CCDS70 GTVMRSLGQNPTEAELRDMMSEIDRD--GNGTVDFPEFLGMM--ARKMKDTDNEEEIREA
40 50 60 70 80
140 150 160 170 180 190
pF1KB6 LRVFDKEGNGTVMGAELRHVLATLGEKMKEEEVEALM-AGQEDSNGCINYEAFVKHIMSI
.:::::.::: : .::::::.. ::::...:::. .. :.. :..: .::: ::. ..:
CCDS70 FRVFDKDGNGFVSAAELRHVMTRLGEKLSDEEVDEMIRAADTDGDGQVNYEEFVRVLVSK
90 100 110 120 130 140
>>CCDS9892.1 CALM1 gene_id:801|Hs108|chr14 (149 aa)
initn: 404 init1: 175 opt: 395 Z-score: 331.2 bits: 67.7 E(32554): 4e-12
Smith-Waterman score: 395; 44.2% identity (74.1% similar) in 147 aa overlap (46-191:4-146)
20 30 40 50 60 70
pF1KB6 AAPAPAPAPAPAPAPAKPKEEKIDLSAIKIEFSKEQQDEFKEAFLLFDRTGDSKITLSQV
....:: :::::: :::. ::. :: ...
CCDS98 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKEL
10 20 30
80 90 100 110 120 130
pF1KB6 GDVLRALGTNPTNAEVRKVLGNPSNEELNAKKIEFEQFLPMMQAISNNKDQATYEDFVEG
: :.:.:: :::.::.. .. : . . :. :.: .:: :: . :: . :.. :.
CCDS98 GTVMRSLGQNPTEAELQDMI-NEVDADGNGT-IDFPEFLTMMA--RKMKDTDSEEEIREA
40 50 60 70 80
140 150 160 170 180 190
pF1KB6 LRVFDKEGNGTVMGAELRHVLATLGEKMKEEEVEALMAGQE-DSNGCINYEAFVKHIMSI
.:::::.::: . .::::::...::::. .:::. .. . :..: .::: ::. .
CCDS98 FRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK
90 100 110 120 130 140
>>CCDS1832.1 CALM2 gene_id:805|Hs108|chr2 (149 aa)
initn: 404 init1: 175 opt: 395 Z-score: 331.2 bits: 67.7 E(32554): 4e-12
Smith-Waterman score: 395; 44.2% identity (74.1% similar) in 147 aa overlap (46-191:4-146)
20 30 40 50 60 70
pF1KB6 AAPAPAPAPAPAPAPAKPKEEKIDLSAIKIEFSKEQQDEFKEAFLLFDRTGDSKITLSQV
....:: :::::: :::. ::. :: ...
CCDS18 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKEL
10 20 30
80 90 100 110 120 130
pF1KB6 GDVLRALGTNPTNAEVRKVLGNPSNEELNAKKIEFEQFLPMMQAISNNKDQATYEDFVEG
: :.:.:: :::.::.. .. : . . :. :.: .:: :: . :: . :.. :.
CCDS18 GTVMRSLGQNPTEAELQDMI-NEVDADGNGT-IDFPEFLTMMA--RKMKDTDSEEEIREA
40 50 60 70 80
140 150 160 170 180 190
pF1KB6 LRVFDKEGNGTVMGAELRHVLATLGEKMKEEEVEALMAGQE-DSNGCINYEAFVKHIMSI
.:::::.::: . .::::::...::::. .:::. .. . :..: .::: ::. .
CCDS18 FRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK
90 100 110 120 130 140
194 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 17:38:41 2016 done: Sat Nov 5 17:38:41 2016
Total Scan time: 2.180 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]