FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6854, 194 aa
  1>>>pF1KB6854 194 - 194 aa - 194 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5514+/-0.000701; mu= 11.9907+/- 0.042
 mean_var=62.7922+/-12.482, 0's: 0 Z-trim(109.0): 7  B-trim: 0 in 0/50
 Lambda= 0.161853
 statistics sampled from 10616 (10619) to 10616 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.326), width:  16
 Scan time:  2.040

The best scores are:                                      opt bits E(32554)
CCDS12884.1 RPS9 gene_id:6203|Hs108|chr19          ( 194) 1279 306.7 5.9e-84
CCDS82397.1 RPS9 gene_id:6203|Hs108|chr19          (  79)  502 125.1 1.1e-29


>>CCDS12884.1 RPS9 gene_id:6203|Hs108|chr19               (194 aa)
 initn: 1279 init1: 1279 opt: 1279  Z-score: 1620.8  bits: 306.7 E(32554): 5.9e-84
Smith-Waterman score: 1279; 100.0% identity (100.0% similar) in 194 aa overlap (1-194:1-194)

               10        20        30        40        50        60
pF1KB6 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK
              130       140       150       160       170       180

              190    
pF1KB6 GQGGAGAGDDEEED
       ::::::::::::::
CCDS12 GQGGAGAGDDEEED
              190    

>>CCDS82397.1 RPS9 gene_id:6203|Hs108|chr19               (79 aa)
 initn: 502 init1: 502 opt: 502  Z-score: 646.5  bits: 125.1 E(32554): 1.1e-29
Smith-Waterman score: 502; 98.7% identity (100.0% similar) in 76 aa overlap (1-76:1-76)

               10        20        30        40        50        60
pF1KB6 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA
       ::::::::::::::.:                                            
CCDS82 LTLDEKDPRRLFEGSASRW                                         
               70                                                  




194 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:16:06 2016 done: Sat Nov  5 00:16:06 2016
 Total Scan time:  2.040 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]