Result of FASTA (omim) for
pF1KB6854
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6854, 194 aa
1>>>pF1KB6854 194 - 194 aa - 194 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4482+/-0.000316; mu= 12.4376+/- 0.020
mean_var=62.9254+/-12.581, 0's: 0 Z-trim(115.7): 13 B-trim: 0 in 0/55
Lambda= 0.161682
statistics sampled from 26321 (26333) to 26321 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.309), width: 16
Scan time: 5.430
The best scores are: opt bits E(85289)
NP_001308633 (OMIM: 603631) 40S ribosomal protein ( 194) 1279 306.5 1.8e-83
NP_001004 (OMIM: 603631) 40S ribosomal protein S9 ( 194) 1279 306.5 1.8e-83
NP_001308630 (OMIM: 603631) 40S ribosomal protein ( 194) 1279 306.5 1.8e-83
NP_001308631 (OMIM: 603631) 40S ribosomal protein ( 194) 1279 306.5 1.8e-83
NP_001308634 (OMIM: 603631) 40S ribosomal protein ( 153) 791 192.6 2.7e-49
XP_016882601 (OMIM: 603631) PREDICTED: 40S ribosom ( 79) 502 125.1 2.9e-29
NP_001308635 (OMIM: 603631) 40S ribosomal protein ( 79) 502 125.1 2.9e-29
NP_060755 (OMIM: 612980) U3 small nucleolar ribonu ( 184) 195 53.6 2.2e-07
>>NP_001308633 (OMIM: 603631) 40S ribosomal protein S9 i (194 aa)
initn: 1279 init1: 1279 opt: 1279 Z-score: 1619.6 bits: 306.5 E(85289): 1.8e-83
Smith-Waterman score: 1279; 100.0% identity (100.0% similar) in 194 aa overlap (1-194:1-194)
10 20 30 40 50 60
pF1KB6 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK
130 140 150 160 170 180
190
pF1KB6 GQGGAGAGDDEEED
::::::::::::::
NP_001 GQGGAGAGDDEEED
190
>>NP_001004 (OMIM: 603631) 40S ribosomal protein S9 isof (194 aa)
initn: 1279 init1: 1279 opt: 1279 Z-score: 1619.6 bits: 306.5 E(85289): 1.8e-83
Smith-Waterman score: 1279; 100.0% identity (100.0% similar) in 194 aa overlap (1-194:1-194)
10 20 30 40 50 60
pF1KB6 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK
130 140 150 160 170 180
190
pF1KB6 GQGGAGAGDDEEED
::::::::::::::
NP_001 GQGGAGAGDDEEED
190
>>NP_001308630 (OMIM: 603631) 40S ribosomal protein S9 i (194 aa)
initn: 1279 init1: 1279 opt: 1279 Z-score: 1619.6 bits: 306.5 E(85289): 1.8e-83
Smith-Waterman score: 1279; 100.0% identity (100.0% similar) in 194 aa overlap (1-194:1-194)
10 20 30 40 50 60
pF1KB6 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK
130 140 150 160 170 180
190
pF1KB6 GQGGAGAGDDEEED
::::::::::::::
NP_001 GQGGAGAGDDEEED
190
>>NP_001308631 (OMIM: 603631) 40S ribosomal protein S9 i (194 aa)
initn: 1279 init1: 1279 opt: 1279 Z-score: 1619.6 bits: 306.5 E(85289): 1.8e-83
Smith-Waterman score: 1279; 100.0% identity (100.0% similar) in 194 aa overlap (1-194:1-194)
10 20 30 40 50 60
pF1KB6 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK
130 140 150 160 170 180
190
pF1KB6 GQGGAGAGDDEEED
::::::::::::::
NP_001 GQGGAGAGDDEEED
190
>>NP_001308634 (OMIM: 603631) 40S ribosomal protein S9 i (153 aa)
initn: 791 init1: 791 opt: 791 Z-score: 1006.1 bits: 192.6 E(85289): 2.7e-49
Smith-Waterman score: 920; 78.9% identity (78.9% similar) in 194 aa overlap (1-194:1-153)
10 20 30 40 50 60
pF1KB6 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL
:::::::::::::::::::::::::::::::::
NP_001 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIG---------------------------
10 20 30
70 80 90 100 110 120
pF1KB6 LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA
::::::::::::::::::::::::::::::::::::::::::::::
NP_001 --------------NALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA
40 50 60 70
130 140 150 160 170 180
pF1KB6 KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK
80 90 100 110 120 130
190
pF1KB6 GQGGAGAGDDEEED
::::::::::::::
NP_001 GQGGAGAGDDEEED
140 150
>>XP_016882601 (OMIM: 603631) PREDICTED: 40S ribosomal p (79 aa)
initn: 502 init1: 502 opt: 502 Z-score: 646.3 bits: 125.1 E(85289): 2.9e-29
Smith-Waterman score: 502; 98.7% identity (100.0% similar) in 76 aa overlap (1-76:1-76)
10 20 30 40 50 60
pF1KB6 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA
::::::::::::::.:
XP_016 LTLDEKDPRRLFEGSASRW
70
>>NP_001308635 (OMIM: 603631) 40S ribosomal protein S9 i (79 aa)
initn: 502 init1: 502 opt: 502 Z-score: 646.3 bits: 125.1 E(85289): 2.9e-29
Smith-Waterman score: 502; 98.7% identity (100.0% similar) in 76 aa overlap (1-76:1-76)
10 20 30 40 50 60
pF1KB6 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA
::::::::::::::.:
NP_001 LTLDEKDPRRLFEGSASRW
70
>>NP_060755 (OMIM: 612980) U3 small nucleolar ribonucleo (184 aa)
initn: 105 init1: 105 opt: 195 Z-score: 253.5 bits: 53.6 E(85289): 2.2e-07
Smith-Waterman score: 195; 31.2% identity (66.4% similar) in 125 aa overlap (27-149:29-150)
10 20 30 40 50
pF1KB6 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAR
.::... .: :. ... : . .:. ::
NP_060 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELAR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 ELLTLDEKDPRRLFEGNALLRRLVRIGVLD-EGKMKL-DYILGLKIEDFLERRLQTQVFK
.: : :.: :. . ::: .: .:.. .:...: :.. . .: .::: : ..:
NP_060 RLRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTA---SSFCRRRLPTVLLK
70 80 90 100 110
120 130 140 150 160 170
pF1KB6 LGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRK
: .:. .. : ....: :.:: .::. :.:.:
NP_060 LRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEER
120 130 140 150 160 170
180 190
pF1KB6 NAKKGQGGAGAGDDEEED
NP_060 DDFDLEA
180
194 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 00:16:07 2016 done: Sat Nov 5 00:16:07 2016
Total Scan time: 5.430 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]