FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6856, 194 aa
  1>>>pF1KB6856 194 - 194 aa - 194 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7862+/-0.000794; mu= 16.4486+/- 0.048
 mean_var=63.1190+/-12.469, 0's: 0 Z-trim(106.9): 13  B-trim: 28 in 2/50
 Lambda= 0.161434
 statistics sampled from 9253 (9256) to 9253 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.284), width:  16
 Scan time:  1.520

The best scores are:                                      opt bits E(32554)
CCDS1648.1 RPS7 gene_id:6201|Hs108|chr2            ( 194) 1228 294.1 3.5e-80


>>CCDS1648.1 RPS7 gene_id:6201|Hs108|chr2                 (194 aa)
 initn: 1228 init1: 1228 opt: 1228  Z-score: 1553.0  bits: 294.1 E(32554): 3.5e-80
Smith-Waterman score: 1228; 100.0% identity (100.0% similar) in 194 aa overlap (1-194:1-194)

               10        20        30        40        50        60
pF1KB6 MFSSSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MFSSSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 IIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 IIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 TLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 TLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKL
              130       140       150       160       170       180

              190    
pF1KB6 TGKDVNFEFPEFQL
       ::::::::::::::
CCDS16 TGKDVNFEFPEFQL
              190    




194 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:23:20 2016 done: Sat Nov  5 00:23:21 2016
 Total Scan time:  1.520 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]