FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6856, 194 aa
  1>>>pF1KB6856 194 - 194 aa - 194 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8328+/-0.000334; mu= 16.5727+/- 0.021
 mean_var=68.3873+/-13.515, 0's: 0 Z-trim(114.1): 4  B-trim: 166 in 1/58
 Lambda= 0.155091
 statistics sampled from 23750 (23753) to 23750 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.659), E-opt: 0.2 (0.279), width:  16
 Scan time:  4.110

The best scores are:                                      opt bits E(85289)
NP_001002 (OMIM: 603658,612563) 40S ribosomal prot ( 194) 1228 283.2 1.8e-76


>>NP_001002 (OMIM: 603658,612563) 40S ribosomal protein   (194 aa)
 initn: 1228 init1: 1228 opt: 1228  Z-score: 1494.1  bits: 283.2 E(85289): 1.8e-76
Smith-Waterman score: 1228; 100.0% identity (100.0% similar) in 194 aa overlap (1-194:1-194)

               10        20        30        40        50        60
pF1KB6 MFSSSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFSSSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 IIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 TLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKL
              130       140       150       160       170       180

              190    
pF1KB6 TGKDVNFEFPEFQL
       ::::::::::::::
NP_001 TGKDVNFEFPEFQL
              190    




194 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:23:21 2016 done: Sat Nov  5 00:23:22 2016
 Total Scan time:  4.110 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]