FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6858, 194 aa
  1>>>pF1KB6858 194 - 194 aa - 194 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6609+/-0.000669; mu= 7.1068+/- 0.041
 mean_var=92.1454+/-18.252, 0's: 0 Z-trim(112.5): 4  B-trim: 0 in 0/52
 Lambda= 0.133610
 statistics sampled from 13221 (13225) to 13221 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.781), E-opt: 0.2 (0.406), width:  16
 Scan time:  2.220

The best scores are:                                      opt bits E(32554)
CCDS7663.2 BNIP3 gene_id:664|Hs108|chr10           ( 259) 1285 256.9 7.4e-69
CCDS6050.1 BNIP3L gene_id:665|Hs108|chr8           ( 219)  723 148.6 2.6e-36
CCDS83267.1 BNIP3L gene_id:665|Hs108|chr8          ( 179)  704 144.9 2.7e-35


>>CCDS7663.2 BNIP3 gene_id:664|Hs108|chr10                (259 aa)
 initn: 1285 init1: 1285 opt: 1285  Z-score: 1349.7  bits: 256.9 E(32554): 7.4e-69
Smith-Waterman score: 1285; 100.0% identity (100.0% similar) in 194 aa overlap (1-194:66-259)

                                             10        20        30
pF1KB6                               MSQNGAPGMQEESLQGSWVELHFSNNGNGG
                                     ::::::::::::::::::::::::::::::
CCDS76 APTSAFPPPAAEAHPAARRGLRSPQLPSGAMSQNGAPGMQEESLQGSWVELHFSNNGNGG
          40        50        60        70        80        90     

               40        50        60        70        80        90
pF1KB6 SVPASVSIYNGDMEKILLDAQHESGRSSSKSSHCDSPPRSQTPQDTNRASETDTHSIGEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 SVPASVSIYNGDMEKILLDAQHESGRSSSKSSHCDSPPRSQTPQDTNRASETDTHSIGEK
         100       110       120       130       140       150     

              100       110       120       130       140       150
pF1KB6 NSSQSEEDDIERRKEVESILKKNSDWIWDWSSRPENIPPKEFLFKHPKRTATLSMRNTSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 NSSQSEEDDIERRKEVESILKKNSDWIWDWSSRPENIPPKEFLFKHPKRTATLSMRNTSV
         160       170       180       190       200       210     

              160       170       180       190    
pF1KB6 MKKGGIFSAEFLKVFLPSLLLSHLLAIGLGIYIGRRLTTSTSTF
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MKKGGIFSAEFLKVFLPSLLLSHLLAIGLGIYIGRRLTTSTSTF
         220       230       240       250         

>>CCDS6050.1 BNIP3L gene_id:665|Hs108|chr8                (219 aa)
 initn: 629 init1: 446 opt: 723  Z-score: 765.4  bits: 148.6 E(32554): 2.6e-36
Smith-Waterman score: 723; 62.4% identity (84.0% similar) in 194 aa overlap (14-194:32-219)

                                10        20                30     
pF1KB6                  MSQNGAPGMQEESLQGSWVELHF-SNNGN-------GG--SVP
                                     :..::::: . :.:::       ::   ::
CCDS60 SSHLVEPPPPLHNNNNNCEENEQSLPPPAGLNSSWVELPMNSSNGNDNGNGKNGGLEHVP
              10        20        30        40        50        60 

            40        50        60         70        80         90 
pF1KB6 ASVSIYNGDMEKILLDAQHESGRSSSK-SSHCDSPPRSQTPQDTNRAS-ETDTHSIGEKN
       .: ::.::::::::::::::::.:::. :::::::    .::. ..   ... :. .. .
CCDS60 SSSSIHNGDMEKILLDAQHESGQSSSRGSSHCDSP----SPQEDGQIMFDVEMHT-SRDH
              70        80        90           100       110       

             100       110       120       130       140       150 
pF1KB6 SSQSEEDDIERRKEVESILKKNSDWIWDWSSRPENIPPKEFLFKHPKRTATLSMRNTSVM
       ::::::. .: .::::. :::..::. :::::::::::::: :.::::...::::....:
CCDS60 SSQSEEEVVEGEKEVEA-LKKSADWVSDWSSRPENIPPKEFHFRHPKRSVSLSMRKSGAM
        120       130        140       150       160       170     

             160       170       180        190    
pF1KB6 KKGGIFSAEFLKVFLPSLLLSHLLAIGLGIYIGRRLTT-STSTF
       ::::::::::::::.:::.:::.::.:::::::.::.: :.::.
CCDS60 KKGGIFSAEFLKVFIPSLFLSHVLALGLGIYIGKRLSTPSASTY
         180       190       200       210         

>>CCDS83267.1 BNIP3L gene_id:665|Hs108|chr8               (179 aa)
 initn: 606 init1: 446 opt: 704  Z-score: 747.0  bits: 144.9 E(32554): 2.7e-35
Smith-Waterman score: 704; 64.6% identity (86.9% similar) in 175 aa overlap (25-194:11-179)

               10        20        30          40        50        
pF1KB6 MSQNGAPGMQEESLQGSWVELHFSNNGNGG--SVPASVSIYNGDMEKILLDAQHESGRSS
                               :. :::   ::.: ::.::::::::::::::::.::
CCDS83               MNSSNGNDNGNGKNGGLEHVPSSSSIHNGDMEKILLDAQHESGQSS
                             10        20        30        40      

       60         70        80         90       100       110      
pF1KB6 SK-SSHCDSPPRSQTPQDTNRAS-ETDTHSIGEKNSSQSEEDDIERRKEVESILKKNSDW
       :. :::::::    .::. ..   ... :. .. .::::::. .: .::::. :::..::
CCDS83 SRGSSHCDSP----SPQEDGQIMFDVEMHT-SRDHSSQSEEEVVEGEKEVEA-LKKSADW
         50            60        70         80        90        100

        120       130       140       150       160       170      
pF1KB6 IWDWSSRPENIPPKEFLFKHPKRTATLSMRNTSVMKKGGIFSAEFLKVFLPSLLLSHLLA
       . :::::::::::::: :.::::...::::....:::::::::::::::.:::.:::.::
CCDS83 VSDWSSRPENIPPKEFHFRHPKRSVSLSMRKSGAMKKGGIFSAEFLKVFIPSLFLSHVLA
              110       120       130       140       150       160

        180        190    
pF1KB6 IGLGIYIGRRLTT-STSTF
       .:::::::.::.: :.::.
CCDS83 LGLGIYIGKRLSTPSASTY
              170         




194 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:39:16 2016 done: Fri Nov  4 14:39:16 2016
 Total Scan time:  2.220 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]