FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6858, 194 aa
  1>>>pF1KB6858 194 - 194 aa - 194 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9260+/-0.000286; mu= 5.8558+/- 0.018
 mean_var=101.3296+/-20.076, 0's: 0 Z-trim(120.2): 5  B-trim: 0 in 0/59
 Lambda= 0.127411
 statistics sampled from 35115 (35120) to 35115 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.781), E-opt: 0.2 (0.412), width:  16
 Scan time:  6.610

The best scores are:                                      opt bits E(85289)
NP_004043 (OMIM: 603293) BCL2/adenovirus E1B 19 kD ( 259) 1285 245.8 4.4e-65
NP_004322 (OMIM: 605368) BCL2/adenovirus E1B 19 kD ( 219)  723 142.4 4.8e-34
NP_001317420 (OMIM: 605368) BCL2/adenovirus E1B 19 ( 179)  704 138.9 4.5e-33


>>NP_004043 (OMIM: 603293) BCL2/adenovirus E1B 19 kDa pr  (259 aa)
 initn: 1285 init1: 1285 opt: 1285  Z-score: 1289.4  bits: 245.8 E(85289): 4.4e-65
Smith-Waterman score: 1285; 100.0% identity (100.0% similar) in 194 aa overlap (1-194:66-259)

                                             10        20        30
pF1KB6                               MSQNGAPGMQEESLQGSWVELHFSNNGNGG
                                     ::::::::::::::::::::::::::::::
NP_004 APTSAFPPPAAEAHPAARRGLRSPQLPSGAMSQNGAPGMQEESLQGSWVELHFSNNGNGG
          40        50        60        70        80        90     

               40        50        60        70        80        90
pF1KB6 SVPASVSIYNGDMEKILLDAQHESGRSSSKSSHCDSPPRSQTPQDTNRASETDTHSIGEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SVPASVSIYNGDMEKILLDAQHESGRSSSKSSHCDSPPRSQTPQDTNRASETDTHSIGEK
         100       110       120       130       140       150     

              100       110       120       130       140       150
pF1KB6 NSSQSEEDDIERRKEVESILKKNSDWIWDWSSRPENIPPKEFLFKHPKRTATLSMRNTSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 NSSQSEEDDIERRKEVESILKKNSDWIWDWSSRPENIPPKEFLFKHPKRTATLSMRNTSV
         160       170       180       190       200       210     

              160       170       180       190    
pF1KB6 MKKGGIFSAEFLKVFLPSLLLSHLLAIGLGIYIGRRLTTSTSTF
       ::::::::::::::::::::::::::::::::::::::::::::
NP_004 MKKGGIFSAEFLKVFLPSLLLSHLLAIGLGIYIGRRLTTSTSTF
         220       230       240       250         

>>NP_004322 (OMIM: 605368) BCL2/adenovirus E1B 19 kDa pr  (219 aa)
 initn: 629 init1: 446 opt: 723  Z-score: 732.3  bits: 142.4 E(85289): 4.8e-34
Smith-Waterman score: 723; 62.4% identity (84.0% similar) in 194 aa overlap (14-194:32-219)

                                10        20                30     
pF1KB6                  MSQNGAPGMQEESLQGSWVELHF-SNNGN-------GG--SVP
                                     :..::::: . :.:::       ::   ::
NP_004 SSHLVEPPPPLHNNNNNCEENEQSLPPPAGLNSSWVELPMNSSNGNDNGNGKNGGLEHVP
              10        20        30        40        50        60 

            40        50        60         70        80         90 
pF1KB6 ASVSIYNGDMEKILLDAQHESGRSSSK-SSHCDSPPRSQTPQDTNRAS-ETDTHSIGEKN
       .: ::.::::::::::::::::.:::. :::::::    .::. ..   ... :. .. .
NP_004 SSSSIHNGDMEKILLDAQHESGQSSSRGSSHCDSP----SPQEDGQIMFDVEMHT-SRDH
              70        80        90           100       110       

             100       110       120       130       140       150 
pF1KB6 SSQSEEDDIERRKEVESILKKNSDWIWDWSSRPENIPPKEFLFKHPKRTATLSMRNTSVM
       ::::::. .: .::::. :::..::. :::::::::::::: :.::::...::::....:
NP_004 SSQSEEEVVEGEKEVEA-LKKSADWVSDWSSRPENIPPKEFHFRHPKRSVSLSMRKSGAM
        120       130        140       150       160       170     

             160       170       180        190    
pF1KB6 KKGGIFSAEFLKVFLPSLLLSHLLAIGLGIYIGRRLTT-STSTF
       ::::::::::::::.:::.:::.::.:::::::.::.: :.::.
NP_004 KKGGIFSAEFLKVFIPSLFLSHVLALGLGIYIGKRLSTPSASTY
         180       190       200       210         

>>NP_001317420 (OMIM: 605368) BCL2/adenovirus E1B 19 kDa  (179 aa)
 initn: 606 init1: 446 opt: 704  Z-score: 714.8  bits: 138.9 E(85289): 4.5e-33
Smith-Waterman score: 704; 64.6% identity (86.9% similar) in 175 aa overlap (25-194:11-179)

               10        20        30          40        50        
pF1KB6 MSQNGAPGMQEESLQGSWVELHFSNNGNGG--SVPASVSIYNGDMEKILLDAQHESGRSS
                               :. :::   ::.: ::.::::::::::::::::.::
NP_001               MNSSNGNDNGNGKNGGLEHVPSSSSIHNGDMEKILLDAQHESGQSS
                             10        20        30        40      

       60         70        80         90       100       110      
pF1KB6 SK-SSHCDSPPRSQTPQDTNRAS-ETDTHSIGEKNSSQSEEDDIERRKEVESILKKNSDW
       :. :::::::    .::. ..   ... :. .. .::::::. .: .::::. :::..::
NP_001 SRGSSHCDSP----SPQEDGQIMFDVEMHT-SRDHSSQSEEEVVEGEKEVEA-LKKSADW
         50            60        70         80        90        100

        120       130       140       150       160       170      
pF1KB6 IWDWSSRPENIPPKEFLFKHPKRTATLSMRNTSVMKKGGIFSAEFLKVFLPSLLLSHLLA
       . :::::::::::::: :.::::...::::....:::::::::::::::.:::.:::.::
NP_001 VSDWSSRPENIPPKEFHFRHPKRSVSLSMRKSGAMKKGGIFSAEFLKVFIPSLFLSHVLA
              110       120       130       140       150       160

        180        190    
pF1KB6 IGLGIYIGRRLTT-STSTF
       .:::::::.::.: :.::.
NP_001 LGLGIYIGKRLSTPSASTY
              170         




194 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:39:17 2016 done: Fri Nov  4 14:39:18 2016
 Total Scan time:  6.610 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]