FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6859, 179 aa
  1>>>pF1KB6859 179 - 179 aa - 179 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0431+/-0.000649; mu= 14.1982+/- 0.039
 mean_var=58.9459+/-11.735, 0's: 0 Z-trim(109.2): 8  B-trim: 0 in 0/55
 Lambda= 0.167050
 statistics sampled from 10700 (10704) to 10700 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.329), width:  16
 Scan time:  2.140

The best scores are:                                      opt bits E(32554)
CCDS11618.1 PTRH2 gene_id:51651|Hs108|chr17        ( 179) 1184 293.0 6.4e-80
CCDS77076.1 PTRH2 gene_id:51651|Hs108|chr17        ( 180) 1184 293.0 6.5e-80


>>CCDS11618.1 PTRH2 gene_id:51651|Hs108|chr17             (179 aa)
 initn: 1184 init1: 1184 opt: 1184  Z-score: 1548.2  bits: 293.0 E(32554): 6.4e-80
Smith-Waterman score: 1184; 100.0% identity (100.0% similar) in 179 aa overlap (1-179:1-179)

               10        20        30        40        50        60
pF1KB6 MPSKSLVMEYLAHPSTLGLAVGVACGMCLGWSLRVCFGMLPKSKTSKTHTDTESEASILG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MPSKSLVMEYLAHPSTLGLAVGVACGMCLGWSLRVCFGMLPKSKTSKTHTDTESEASILG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DSGEYKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DSGEYKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVKA
               70        80        90       100       110       120

              130       140       150       160       170         
pF1KB6 PDEETLIALLAHAKMLGLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKLY
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PDEETLIALLAHAKMLGLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKLY
              130       140       150       160       170         

>>CCDS77076.1 PTRH2 gene_id:51651|Hs108|chr17             (180 aa)
 initn: 1184 init1: 1184 opt: 1184  Z-score: 1548.2  bits: 293.0 E(32554): 6.5e-80
Smith-Waterman score: 1184; 100.0% identity (100.0% similar) in 179 aa overlap (1-179:2-180)

                10        20        30        40        50         
pF1KB6  MPSKSLVMEYLAHPSTLGLAVGVACGMCLGWSLRVCFGMLPKSKTSKTHTDTESEASIL
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MMPSKSLVMEYLAHPSTLGLAVGVACGMCLGWSLRVCFGMLPKSKTSKTHTDTESEASIL
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB6 GDSGEYKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 GDSGEYKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVK
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB6 APDEETLIALLAHAKMLGLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 APDEETLIALLAHAKMLGLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKLY
              130       140       150       160       170       180




179 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:15:51 2016 done: Fri Nov  4 14:15:52 2016
 Total Scan time:  2.140 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]