FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6859, 179 aa
  1>>>pF1KB6859 179 - 179 aa - 179 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8546+/-0.000309; mu= 15.3785+/- 0.019
 mean_var=60.5411+/-12.116, 0's: 0 Z-trim(115.8): 18  B-trim: 88 in 1/57
 Lambda= 0.164835
 statistics sampled from 26456 (26474) to 26456 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.705), E-opt: 0.2 (0.31), width:  16
 Scan time:  5.070

The best scores are:                                      opt bits E(85289)
NP_057161 (OMIM: 608625,616263) peptidyl-tRNA hydr ( 179) 1184 289.4 2.1e-78
XP_011523189 (OMIM: 608625,616263) PREDICTED: pept ( 179) 1184 289.4 2.1e-78
NP_001015509 (OMIM: 608625,616263) peptidyl-tRNA h ( 180) 1184 289.4 2.1e-78


>>NP_057161 (OMIM: 608625,616263) peptidyl-tRNA hydrolas  (179 aa)
 initn: 1184 init1: 1184 opt: 1184  Z-score: 1528.7  bits: 289.4 E(85289): 2.1e-78
Smith-Waterman score: 1184; 100.0% identity (100.0% similar) in 179 aa overlap (1-179:1-179)

               10        20        30        40        50        60
pF1KB6 MPSKSLVMEYLAHPSTLGLAVGVACGMCLGWSLRVCFGMLPKSKTSKTHTDTESEASILG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MPSKSLVMEYLAHPSTLGLAVGVACGMCLGWSLRVCFGMLPKSKTSKTHTDTESEASILG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DSGEYKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 DSGEYKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVKA
               70        80        90       100       110       120

              130       140       150       160       170         
pF1KB6 PDEETLIALLAHAKMLGLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKLY
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 PDEETLIALLAHAKMLGLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKLY
              130       140       150       160       170         

>>XP_011523189 (OMIM: 608625,616263) PREDICTED: peptidyl  (179 aa)
 initn: 1184 init1: 1184 opt: 1184  Z-score: 1528.7  bits: 289.4 E(85289): 2.1e-78
Smith-Waterman score: 1184; 100.0% identity (100.0% similar) in 179 aa overlap (1-179:1-179)

               10        20        30        40        50        60
pF1KB6 MPSKSLVMEYLAHPSTLGLAVGVACGMCLGWSLRVCFGMLPKSKTSKTHTDTESEASILG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MPSKSLVMEYLAHPSTLGLAVGVACGMCLGWSLRVCFGMLPKSKTSKTHTDTESEASILG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DSGEYKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DSGEYKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVKA
               70        80        90       100       110       120

              130       140       150       160       170         
pF1KB6 PDEETLIALLAHAKMLGLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKLY
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PDEETLIALLAHAKMLGLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKLY
              130       140       150       160       170         

>>NP_001015509 (OMIM: 608625,616263) peptidyl-tRNA hydro  (180 aa)
 initn: 1184 init1: 1184 opt: 1184  Z-score: 1528.6  bits: 289.4 E(85289): 2.1e-78
Smith-Waterman score: 1184; 100.0% identity (100.0% similar) in 179 aa overlap (1-179:2-180)

                10        20        30        40        50         
pF1KB6  MPSKSLVMEYLAHPSTLGLAVGVACGMCLGWSLRVCFGMLPKSKTSKTHTDTESEASIL
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMPSKSLVMEYLAHPSTLGLAVGVACGMCLGWSLRVCFGMLPKSKTSKTHTDTESEASIL
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB6 GDSGEYKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GDSGEYKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVK
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB6 APDEETLIALLAHAKMLGLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 APDEETLIALLAHAKMLGLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKLY
              130       140       150       160       170       180




179 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:15:52 2016 done: Fri Nov  4 14:15:53 2016
 Total Scan time:  5.070 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]