FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6861, 179 aa
  1>>>pF1KB6861 179 - 179 aa - 179 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3789+/-0.000244; mu= 14.1394+/- 0.015
 mean_var=81.2262+/-16.444, 0's: 0 Z-trim(123.3): 6  B-trim: 1279 in 1/60
 Lambda= 0.142307
 statistics sampled from 42763 (42769) to 42763 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.844), E-opt: 0.2 (0.501), width:  16
 Scan time:  6.070

The best scores are:                                      opt bits E(85289)
NP_004996 (OMIM: 252010,601445) NADH dehydrogenase ( 179) 1311 277.3   9e-75
NP_001298097 (OMIM: 252010,601445) NADH dehydrogen ( 168) 1016 216.7 1.5e-56
NP_001265575 (OMIM: 252010,601445) NADH dehydrogen ( 136) 1009 215.2 3.4e-56
NP_001265574 (OMIM: 252010,601445) NADH dehydrogen ( 123)  920 196.9 9.9e-51


>>NP_004996 (OMIM: 252010,601445) NADH dehydrogenase [ub  (179 aa)
 initn: 1311 init1: 1311 opt: 1311  Z-score: 1463.4  bits: 277.3 E(85289): 9e-75
Smith-Waterman score: 1311; 100.0% identity (100.0% similar) in 179 aa overlap (1-179:1-179)

               10        20        30        40        50        60
pF1KB6 MAFLASGPYLTHQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MAFLASGPYLTHQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 TQLLKEAEEEFWYRQHPQPYIFPDSPGGTSYERYDCYKVPEWCLDDWHPSEKAMYPDYFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 TQLLKEAEEEFWYRQHPQPYIFPDSPGGTSYERYDCYKVPEWCLDDWHPSEKAMYPDYFA
               70        80        90       100       110       120

              130       140       150       160       170         
pF1KB6 KREQWKKLRRESWEREVKQLQEETPPGGPLTEALPPARKEGDLPPLWWYIVTRPRERPM
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KREQWKKLRRESWEREVKQLQEETPPGGPLTEALPPARKEGDLPPLWWYIVTRPRERPM
              130       140       150       160       170         

>>NP_001298097 (OMIM: 252010,601445) NADH dehydrogenase   (168 aa)
 initn: 1016 init1: 1016 opt: 1016  Z-score: 1136.4  bits: 216.7 E(85289): 1.5e-56
Smith-Waterman score: 1197; 93.9% identity (93.9% similar) in 179 aa overlap (1-179:1-168)

               10        20        30        40        50        60
pF1KB6 MAFLASGPYLTHQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKA
       :::::::::::::::::::::::::::::::::           ::::::::::::::::
NP_001 MAFLASGPYLTHQQKVLRLYKRALRHLESWCVQ-----------RARFEEHKNEKDMAKA
               10        20        30                   40         

               70        80        90       100       110       120
pF1KB6 TQLLKEAEEEFWYRQHPQPYIFPDSPGGTSYERYDCYKVPEWCLDDWHPSEKAMYPDYFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TQLLKEAEEEFWYRQHPQPYIFPDSPGGTSYERYDCYKVPEWCLDDWHPSEKAMYPDYFA
      50        60        70        80        90       100         

              130       140       150       160       170         
pF1KB6 KREQWKKLRRESWEREVKQLQEETPPGGPLTEALPPARKEGDLPPLWWYIVTRPRERPM
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KREQWKKLRRESWEREVKQLQEETPPGGPLTEALPPARKEGDLPPLWWYIVTRPRERPM
     110       120       130       140       150       160        

>>NP_001265575 (OMIM: 252010,601445) NADH dehydrogenase   (136 aa)
 initn: 1009 init1: 1009 opt: 1009  Z-score: 1129.9  bits: 215.2 E(85289): 3.4e-56
Smith-Waterman score: 1009; 100.0% identity (100.0% similar) in 136 aa overlap (44-179:1-136)

            20        30        40        50        60        70   
pF1KB6 QKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKEAEEEFWY
                                     ::::::::::::::::::::::::::::::
NP_001                               MRARFEEHKNEKDMAKATQLLKEAEEEFWY
                                             10        20        30

            80        90       100       110       120       130   
pF1KB6 RQHPQPYIFPDSPGGTSYERYDCYKVPEWCLDDWHPSEKAMYPDYFAKREQWKKLRRESW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RQHPQPYIFPDSPGGTSYERYDCYKVPEWCLDDWHPSEKAMYPDYFAKREQWKKLRRESW
               40        50        60        70        80        90

           140       150       160       170         
pF1KB6 EREVKQLQEETPPGGPLTEALPPARKEGDLPPLWWYIVTRPRERPM
       ::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EREVKQLQEETPPGGPLTEALPPARKEGDLPPLWWYIVTRPRERPM
              100       110       120       130      

>>NP_001265574 (OMIM: 252010,601445) NADH dehydrogenase   (123 aa)
 initn: 920 init1: 920 opt: 920  Z-score: 1031.8  bits: 196.9 E(85289): 9.9e-51
Smith-Waterman score: 920; 100.0% identity (100.0% similar) in 123 aa overlap (57-179:1-123)

         30        40        50        60        70        80      
pF1KB6 LESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKEAEEEFWYRQHPQPYIFPDSP
                                     ::::::::::::::::::::::::::::::
NP_001                               MAKATQLLKEAEEEFWYRQHPQPYIFPDSP
                                             10        20        30

         90       100       110       120       130       140      
pF1KB6 GGTSYERYDCYKVPEWCLDDWHPSEKAMYPDYFAKREQWKKLRRESWEREVKQLQEETPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGTSYERYDCYKVPEWCLDDWHPSEKAMYPDYFAKREQWKKLRRESWEREVKQLQEETPP
               40        50        60        70        80        90

        150       160       170         
pF1KB6 GGPLTEALPPARKEGDLPPLWWYIVTRPRERPM
       :::::::::::::::::::::::::::::::::
NP_001 GGPLTEALPPARKEGDLPPLWWYIVTRPRERPM
              100       110       120   




179 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:05:52 2016 done: Sat Nov  5 00:05:53 2016
 Total Scan time:  6.070 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]