FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6864, 195 aa
  1>>>pF1KB6864 195 - 195 aa - 195 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1056+/-0.000757; mu= 13.8313+/- 0.045
 mean_var=56.7654+/-11.279, 0's: 0 Z-trim(106.7): 13  B-trim: 0 in 0/51
 Lambda= 0.170229
 statistics sampled from 9124 (9132) to 9124 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.679), E-opt: 0.2 (0.281), width:  16
 Scan time:  1.380

The best scores are:                                      opt bits E(32554)
CCDS7459.1 EXOSC1 gene_id:51013|Hs108|chr10        ( 195) 1284 323.2 6.3e-89
CCDS81492.1 EXOSC1 gene_id:51013|Hs108|chr10       ( 170)  782 199.9 7.2e-52


>>CCDS7459.1 EXOSC1 gene_id:51013|Hs108|chr10             (195 aa)
 initn: 1284 init1: 1284 opt: 1284  Z-score: 1710.0  bits: 323.2 E(32554): 6.3e-89
Smith-Waterman score: 1284; 100.0% identity (100.0% similar) in 195 aa overlap (1-195:1-195)

               10        20        30        40        50        60
pF1KB6 MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLMKSSENGALPVVSVVRETE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLMKSSENGALPVVSVVRETE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SQLLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SQLLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGIQMVPISWCEMQCPKTHTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGIQMVPISWCEMQCPKTHTK
              130       140       150       160       170       180

              190     
pF1KB6 EFRKVARVQPEFLQT
       :::::::::::::::
CCDS74 EFRKVARVQPEFLQT
              190     

>>CCDS81492.1 EXOSC1 gene_id:51013|Hs108|chr10            (170 aa)
 initn: 782 init1: 782 opt: 782  Z-score: 1044.7  bits: 199.9 E(32554): 7.2e-52
Smith-Waterman score: 1068; 87.2% identity (87.2% similar) in 195 aa overlap (1-195:1-170)

               10        20        30        40        50        60
pF1KB6 MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLMKSSENGALPVVSVVRETE
       :::::::::::::::::::::::::::::::::::::::::::::::::           
CCDS81 MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLMKSSENGA-----------
               10        20        30        40                    

               70        80        90       100       110       120
pF1KB6 SQLLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYK
                     ::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 --------------VSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYK
                    50        60        70        80        90     

              130       140       150       160       170       180
pF1KB6 SFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGIQMVPISWCEMQCPKTHTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGIQMVPISWCEMQCPKTHTK
         100       110       120       130       140       150     

              190     
pF1KB6 EFRKVARVQPEFLQT
       :::::::::::::::
CCDS81 EFRKVARVQPEFLQT
         160       170




195 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:11:47 2016 done: Sat Nov  5 00:11:47 2016
 Total Scan time:  1.380 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]