FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6865, 179 aa
  1>>>pF1KB6865 179 - 179 aa - 179 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1097+/-0.000646; mu= 14.9262+/- 0.039
 mean_var=69.9882+/-14.028, 0's: 0 Z-trim(111.1): 3  B-trim: 285 in 2/49
 Lambda= 0.153307
 statistics sampled from 12131 (12133) to 12131 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.741), E-opt: 0.2 (0.373), width:  16
 Scan time:  1.890

The best scores are:                                      opt bits E(32554)
CCDS1653.1 ADI1 gene_id:55256|Hs108|chr2           ( 179) 1267 288.3 1.7e-78
CCDS77380.1 ADI1 gene_id:55256|Hs108|chr2          ( 173)  960 220.4 4.6e-58


>>CCDS1653.1 ADI1 gene_id:55256|Hs108|chr2                (179 aa)
 initn: 1267 init1: 1267 opt: 1267  Z-score: 1522.7  bits: 288.3 E(32554): 1.7e-78
Smith-Waterman score: 1267; 100.0% identity (100.0% similar) in 179 aa overlap (1-179:1-179)

               10        20        30        40        50        60
pF1KB6 MVQAWYMDDAPGDPRQPHRPDPGRPVGLEQLRRLGVLYWKLDADKYENDPELEKIRRERN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MVQAWYMDDAPGDPRQPHRPDPGRPVGLEQLRRLGVLYWKLDADKYENDPELEKIRRERN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 YSWMDIITICKDKLPNYEEKIKMFYEEHLHLDDEIRYILDGSGYFDVRDKEDQWIRIFME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 YSWMDIITICKDKLPNYEEKIKMFYEEHLHLDDEIRYILDGSGYFDVRDKEDQWIRIFME
               70        80        90       100       110       120

              130       140       150       160       170         
pF1KB6 KGDMVTLPAGIYHRFTVDEKNYTKAMRLFVGEPVWTAYNRPADHFEARGQYVKFLAQTA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 KGDMVTLPAGIYHRFTVDEKNYTKAMRLFVGEPVWTAYNRPADHFEARGQYVKFLAQTA
              130       140       150       160       170         

>>CCDS77380.1 ADI1 gene_id:55256|Hs108|chr2               (173 aa)
 initn: 960 init1: 960 opt: 960  Z-score: 1155.9  bits: 220.4 E(32554): 4.6e-58
Smith-Waterman score: 960; 100.0% identity (100.0% similar) in 139 aa overlap (41-179:35-173)

               20        30        40        50        60        70
pF1KB6 PGDPRQPHRPDPGRPVGLEQLRRLGVLYWKLDADKYENDPELEKIRRERNYSWMDIITIC
                                     ::::::::::::::::::::::::::::::
CCDS77 SSKLMFLCHGSSRSLHSGSLTSCNTGVCCSLDADKYENDPELEKIRRERNYSWMDIITIC
           10        20        30        40        50        60    

               80        90       100       110       120       130
pF1KB6 KDKLPNYEEKIKMFYEEHLHLDDEIRYILDGSGYFDVRDKEDQWIRIFMEKGDMVTLPAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 KDKLPNYEEKIKMFYEEHLHLDDEIRYILDGSGYFDVRDKEDQWIRIFMEKGDMVTLPAG
           70        80        90       100       110       120    

              140       150       160       170         
pF1KB6 IYHRFTVDEKNYTKAMRLFVGEPVWTAYNRPADHFEARGQYVKFLAQTA
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 IYHRFTVDEKNYTKAMRLFVGEPVWTAYNRPADHFEARGQYVKFLAQTA
          130       140       150       160       170   




179 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:16:50 2016 done: Sat Nov  5 00:16:50 2016
 Total Scan time:  1.890 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]