FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6865, 179 aa
  1>>>pF1KB6865 179 - 179 aa - 179 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0916+/-0.000279; mu= 14.9794+/- 0.018
 mean_var=72.3028+/-14.442, 0's: 0 Z-trim(118.8): 2  B-trim: 49 in 1/56
 Lambda= 0.150833
 statistics sampled from 32167 (32169) to 32167 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.741), E-opt: 0.2 (0.377), width:  16
 Scan time:  5.670

The best scores are:                                      opt bits E(85289)
NP_060739 (OMIM: 613400) 1,2-dihydroxy-3-keto-5-me ( 179) 1267 283.9 9.4e-77
NP_001293006 (OMIM: 613400) 1,2-dihydroxy-3-keto-5 ( 173)  960 217.1 1.2e-56


>>NP_060739 (OMIM: 613400) 1,2-dihydroxy-3-keto-5-methyl  (179 aa)
 initn: 1267 init1: 1267 opt: 1267  Z-score: 1499.0  bits: 283.9 E(85289): 9.4e-77
Smith-Waterman score: 1267; 100.0% identity (100.0% similar) in 179 aa overlap (1-179:1-179)

               10        20        30        40        50        60
pF1KB6 MVQAWYMDDAPGDPRQPHRPDPGRPVGLEQLRRLGVLYWKLDADKYENDPELEKIRRERN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MVQAWYMDDAPGDPRQPHRPDPGRPVGLEQLRRLGVLYWKLDADKYENDPELEKIRRERN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 YSWMDIITICKDKLPNYEEKIKMFYEEHLHLDDEIRYILDGSGYFDVRDKEDQWIRIFME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 YSWMDIITICKDKLPNYEEKIKMFYEEHLHLDDEIRYILDGSGYFDVRDKEDQWIRIFME
               70        80        90       100       110       120

              130       140       150       160       170         
pF1KB6 KGDMVTLPAGIYHRFTVDEKNYTKAMRLFVGEPVWTAYNRPADHFEARGQYVKFLAQTA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 KGDMVTLPAGIYHRFTVDEKNYTKAMRLFVGEPVWTAYNRPADHFEARGQYVKFLAQTA
              130       140       150       160       170         

>>NP_001293006 (OMIM: 613400) 1,2-dihydroxy-3-keto-5-met  (173 aa)
 initn: 960 init1: 960 opt: 960  Z-score: 1138.1  bits: 217.1 E(85289): 1.2e-56
Smith-Waterman score: 960; 100.0% identity (100.0% similar) in 139 aa overlap (41-179:35-173)

               20        30        40        50        60        70
pF1KB6 PGDPRQPHRPDPGRPVGLEQLRRLGVLYWKLDADKYENDPELEKIRRERNYSWMDIITIC
                                     ::::::::::::::::::::::::::::::
NP_001 SSKLMFLCHGSSRSLHSGSLTSCNTGVCCSLDADKYENDPELEKIRRERNYSWMDIITIC
           10        20        30        40        50        60    

               80        90       100       110       120       130
pF1KB6 KDKLPNYEEKIKMFYEEHLHLDDEIRYILDGSGYFDVRDKEDQWIRIFMEKGDMVTLPAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KDKLPNYEEKIKMFYEEHLHLDDEIRYILDGSGYFDVRDKEDQWIRIFMEKGDMVTLPAG
           70        80        90       100       110       120    

              140       150       160       170         
pF1KB6 IYHRFTVDEKNYTKAMRLFVGEPVWTAYNRPADHFEARGQYVKFLAQTA
       :::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IYHRFTVDEKNYTKAMRLFVGEPVWTAYNRPADHFEARGQYVKFLAQTA
          130       140       150       160       170   




179 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:16:50 2016 done: Sat Nov  5 00:16:51 2016
 Total Scan time:  5.670 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]