FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6866, 196 aa
  1>>>pF1KB6866 196 - 196 aa - 196 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7380+/-0.000286; mu= 7.4180+/- 0.018
 mean_var=109.7134+/-22.556, 0's: 0 Z-trim(121.7): 8  B-trim: 1467 in 2/51
 Lambda= 0.122446
 statistics sampled from 38575 (38587) to 38575 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.796), E-opt: 0.2 (0.452), width:  16
 Scan time:  6.930

The best scores are:                                      opt bits E(85289)
NP_055265 (OMIM: 604964) signaling threshold-regul ( 196) 1335 245.4 4.3e-65


>>NP_055265 (OMIM: 604964) signaling threshold-regulatin  (196 aa)
 initn: 1335 init1: 1335 opt: 1335  Z-score: 1289.7  bits: 245.4 E(85289): 4.3e-65
Smith-Waterman score: 1335; 100.0% identity (100.0% similar) in 196 aa overlap (1-196:1-196)

               10        20        30        40        50        60
pF1KB6 MNQADPRLRAVCLWTLTSAAMSRGDNCTDLLALGIPSITQAWGLWVLLGAVTLLFLISLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MNQADPRLRAVCLWTLTSAAMSRGDNCTDLLALGIPSITQAWGLWVLLGAVTLLFLISLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 AHLSQWTRGRSRSHPGQGRSGESVEEVPLYGNLHYLQTGRLSQDPEPDQQDPTLGGPARA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 AHLSQWTRGRSRSHPGQGRSGESVEEVPLYGNLHYLQTGRLSQDPEPDQQDPTLGGPARA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 AEEVMCYTSLQLRPPQGRIPGPGTPVKYSEVVLDSEPKSQASGPEPELYASVCAQTRRAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 AEEVMCYTSLQLRPPQGRIPGPGTPVKYSEVVLDSEPKSQASGPEPELYASVCAQTRRAR
              130       140       150       160       170       180

              190      
pF1KB6 ASFPDQAYANSQPAAS
       ::::::::::::::::
NP_055 ASFPDQAYANSQPAAS
              190      




196 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:07:51 2016 done: Sat Nov  5 14:07:52 2016
 Total Scan time:  6.930 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]