FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6867, 180 aa
  1>>>pF1KB6867 180 - 180 aa - 180 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.2472+/- 0.001; mu= -9.4904+/- 0.061
 mean_var=527.3107+/-109.043, 0's: 0 Z-trim(118.8): 25  B-trim: 198 in 1/53
 Lambda= 0.055852
 statistics sampled from 19783 (19808) to 19783 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.859), E-opt: 0.2 (0.608), width:  16
 Scan time:  2.160

The best scores are:                                      opt bits E(32554)
CCDS34436.1 SNRPC gene_id:6631|Hs108|chr6          ( 159) 1206 109.7 8.8e-25


>>CCDS34436.1 SNRPC gene_id:6631|Hs108|chr6               (159 aa)
 initn: 1206 init1: 1206 opt: 1206  Z-score: 558.4  bits: 109.7 E(32554): 8.8e-25
Smith-Waterman score: 1206; 99.4% identity (100.0% similar) in 157 aa overlap (24-180:3-159)

               10        20        30        40        50        60
pF1KB6 MNSASVDGHLSGCRLFLFLSPLFRFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQ
                              .::::::::::::::::::::::::::::::::::::
CCDS34                      MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQ
                                    10        20        30         

               70        80        90       100       110       120
pF1KB6 KWMEEQAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KWMEEQAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGG
      40        50        60        70        80        90         

              130       140       150       160       170       180
pF1KB6 PPMMPMMGPPPPGMMPVGPAPGMRPPMGGHMPMMPGPPMMRPPARPMMVPTRPGMTRPDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PPMMPMMGPPPPGMMPVGPAPGMRPPMGGHMPMMPGPPMMRPPARPMMVPTRPGMTRPDR
     100       110       120       130       140       150         




180 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:41:50 2016 done: Fri Nov  4 14:41:50 2016
 Total Scan time:  2.160 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]