Result of FASTA (ccds) for
pF1KB6871
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6871, 180 aa
1>>>pF1KB6871 180 - 180 aa - 180 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5751+/- 0.001; mu= 11.7111+/- 0.061
mean_var=84.6084+/-18.443, 0's: 0 Z-trim(106.0): 161 B-trim: 600 in 2/48
Lambda= 0.139434
statistics sampled from 8566 (8760) to 8566 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.269), width: 16
Scan time: 1.820
The best scores are: opt bits E(32554)
CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 ( 180) 1189 248.7 1.4e-66
CCDS2884.1 ARF4 gene_id:378|Hs108|chr3 ( 180) 1096 230.0 6.1e-61
CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 ( 181) 972 205.1 2e-53
CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 ( 181) 957 202.0 1.6e-52
CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 ( 175) 809 172.3 1.4e-43
CCDS44958.1 ARL1 gene_id:400|Hs108|chr12 ( 181) 711 152.6 1.3e-37
CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5 ( 574) 671 144.9 8.2e-35
CCDS43322.1 TRIM23 gene_id:373|Hs108|chr5 ( 569) 590 128.6 6.5e-30
CCDS2195.1 ARL5A gene_id:26225|Hs108|chr2 ( 179) 560 122.2 1.7e-28
CCDS7131.1 ARL5B gene_id:221079|Hs108|chr10 ( 179) 559 122.0 2e-28
CCDS3986.1 TRIM23 gene_id:373|Hs108|chr5 ( 546) 562 122.9 3.1e-28
CCDS8088.1 ARL2 gene_id:402|Hs108|chr11 ( 184) 547 119.6 1.1e-27
CCDS3192.1 ARL14 gene_id:80117|Hs108|chr3 ( 192) 538 117.8 4e-27
CCDS7538.1 ARL3 gene_id:403|Hs108|chr10 ( 182) 531 116.4 1e-26
CCDS2512.1 ARL4C gene_id:10123|Hs108|chr2 ( 192) 519 114.0 5.6e-26
CCDS63169.1 ARL4C gene_id:10123|Hs108|chr2 ( 201) 519 114.0 5.8e-26
CCDS73510.1 ARL1 gene_id:400|Hs108|chr12 ( 135) 502 110.4 4.6e-25
CCDS5359.1 ARL4A gene_id:10124|Hs108|chr7 ( 200) 499 109.9 9.4e-25
CCDS11463.1 ARL4D gene_id:379|Hs108|chr17 ( 201) 465 103.1 1.1e-22
CCDS45664.1 ARL5C gene_id:390790|Hs108|chr17 ( 179) 458 101.7 2.6e-22
CCDS9419.1 ARL11 gene_id:115761|Hs108|chr13 ( 196) 450 100.1 8.6e-22
CCDS46425.1 ARL5A gene_id:26225|Hs108|chr2 ( 142) 448 99.6 8.8e-22
CCDS2928.1 ARL6 gene_id:84100|Hs108|chr3 ( 186) 428 95.6 1.8e-20
CCDS74086.1 ARL17A gene_id:51326|Hs108|chr17 ( 88) 396 89.0 8.6e-19
CCDS74087.1 ARL17A gene_id:51326|Hs108|chr17 ( 141) 396 89.1 1.2e-18
CCDS58557.1 ARL17B gene_id:100506084|Hs108|chr17 ( 177) 396 89.2 1.5e-18
CCDS45718.1 ARL17A gene_id:51326|Hs108|chr17 ( 177) 396 89.2 1.5e-18
CCDS45717.1 ARL17A gene_id:51326|Hs108|chr17 ( 125) 390 87.9 2.6e-18
CCDS54137.1 ARL17B gene_id:100506084|Hs108|chr17 ( 125) 390 87.9 2.6e-18
CCDS82144.1 ARL17B gene_id:100506084|Hs108|chr17 ( 95) 388 87.4 2.8e-18
CCDS82146.1 ARL17A gene_id:51326|Hs108|chr17 ( 95) 388 87.4 2.8e-18
CCDS2566.1 ARL8B gene_id:55207|Hs108|chr3 ( 186) 387 87.4 5.4e-18
CCDS1421.1 ARL8A gene_id:127829|Hs108|chr1 ( 186) 375 85.0 2.9e-17
CCDS55770.1 ARL2 gene_id:402|Hs108|chr11 ( 157) 367 83.3 7.7e-17
CCDS13533.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 201) 350 80.0 9.9e-16
CCDS54850.1 ARL15 gene_id:54622|Hs108|chr5 ( 204) 314 72.7 1.5e-13
CCDS46630.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 173) 311 72.1 2e-13
CCDS2925.1 ARL13B gene_id:200894|Hs108|chr3 ( 428) 306 71.4 8.3e-13
CCDS4177.1 SAR1B gene_id:51128|Hs108|chr5 ( 198) 298 69.5 1.4e-12
CCDS4400.1 ARL10 gene_id:285598|Hs108|chr5 ( 244) 291 68.2 4.3e-12
CCDS68172.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 154) 284 66.6 8e-12
CCDS73004.1 ARL8A gene_id:127829|Hs108|chr1 ( 147) 281 66.0 1.2e-11
CCDS7298.1 SAR1A gene_id:56681|Hs108|chr10 ( 198) 282 66.3 1.3e-11
>>CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 (180 aa)
initn: 1189 init1: 1189 opt: 1189 Z-score: 1308.7 bits: 248.7 E(32554): 1.4e-66
Smith-Waterman score: 1189; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:1-180)
10 20 30 40 50 60
pF1KB6 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR
130 140 150 160 170 180
>>CCDS2884.1 ARF4 gene_id:378|Hs108|chr3 (180 aa)
initn: 1096 init1: 1096 opt: 1096 Z-score: 1207.6 bits: 230.0 E(32554): 6.1e-61
Smith-Waterman score: 1096; 90.0% identity (97.2% similar) in 180 aa overlap (1-180:1-180)
10 20 30 40 50 60
pF1KB6 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
::::.:.::::.::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV
::::::::::::.:::::.::::::::::::::::::::.:: :::::::: :::::::
CCDS28 ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR
::.::::::.:::: .::.::::::: ::.:::::::::::::::::.::::::.:::::
CCDS28 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR
130 140 150 160 170 180
>>CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 (181 aa)
initn: 972 init1: 972 opt: 972 Z-score: 1072.7 bits: 205.1 E(32554): 2e-53
Smith-Waterman score: 972; 81.9% identity (93.2% similar) in 177 aa overlap (1-177:1-177)
10 20 30 40 50 60
pF1KB6 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
:: . ::. .::::.:::::::::::::::::::::::::::::::::::::::::::
CCDS15 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV
: ::::::::::::::::::::::::::::::::::::::.:. .::..:: ::::::::
CCDS15 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR
:::::::::.:::: ..:.::::::. :: :.::.::::::.: :::.::::::..:
CCDS15 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
130 140 150 160 170 180
CCDS15 K
>>CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 (181 aa)
initn: 957 init1: 957 opt: 957 Z-score: 1056.4 bits: 202.0 E(32554): 1.6e-52
Smith-Waterman score: 957; 78.9% identity (93.3% similar) in 180 aa overlap (1-180:1-180)
10 20 30 40 50 60
pF1KB6 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
:: . :.. ..:::.:::::::::::::::::::::::::::::::::::::::::::
CCDS87 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV
: ::::::::::::::::::::::::::::::::::::::.:. .::..:: ::::::::
CCDS87 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR
:::::::::.:::: ..:.::::::. :: :.::.::::::.: :::.:::::...:...
CCDS87 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK
130 140 150 160 170 180
CCDS87 K
>>CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 (175 aa)
initn: 840 init1: 799 opt: 809 Z-score: 895.7 bits: 172.3 E(32554): 1.4e-43
Smith-Waterman score: 809; 67.1% identity (90.4% similar) in 167 aa overlap (8-174:4-170)
10 20 30 40 50 60
pF1KB6 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
..:.:::.:.:::::.:::::::::::::::::. ::::::.::::::: :::
CCDS96 MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKN
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV
. :.:::::::::::::::::. .::::::::: ::.:..:. .::...... :.:::.
CCDS96 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR
.:.::::::.:.:: :. .:::: ..:.:.:::: .:::.: :::.:: ::.
CCDS96 ILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS
120 130 140 150 160 170
>>CCDS44958.1 ARL1 gene_id:400|Hs108|chr12 (181 aa)
initn: 727 init1: 711 opt: 711 Z-score: 789.0 bits: 152.6 E(32554): 1.3e-37
Smith-Waterman score: 711; 58.3% identity (82.8% similar) in 180 aa overlap (1-180:1-180)
10 20 30 40 50 60
pF1KB6 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
:: :..:: .:: ..::::..:::.::::::::.:..::.:::::::::::::: :::
CCDS44 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV
. : :::.::: .::: :: :..::...:.:::: ::.:. : .:: ::.:.::: :.
CCDS44 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR
:.:::::::: .:: ::....::: :..: : . : ::.:::: ....:: . :..:
CCDS44 LVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR
130 140 150 160 170 180
CCDS44 Q
>>CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5 (574 aa)
initn: 663 init1: 542 opt: 671 Z-score: 738.5 bits: 144.9 E(32554): 8.2e-35
Smith-Waterman score: 671; 59.1% identity (85.4% similar) in 164 aa overlap (15-177:402-565)
10 20 30 40
pF1KB6 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVT
: ..:.. .:::.:::::::.::: :..
CCDS39 QQFTEVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTILFKLKQDEFMQ
380 390 400 410 420 430
50 60 70 80 90 100
pF1KB6 TIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESA
:::::::::::::::. ::.:::::. :.::::.::. :::...:::::. :.:..:.
CCDS39 PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAH
440 450 460 470 480 490
110 120 130 140 150 160
pF1KB6 DELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLR-SRTWYVQATCATQG
.:: :.: : :::::.::.::::::. .:. : :.:. :.:..: .:.::.:. : .:
CCDS39 SELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSG
500 510 520 530 540 550
170 180
pF1KB6 TGLYDGLDWLSHELSKR
:::.::::::..:
CCDS39 MGLYEGLDWLSRQLVAAGVLDVA
560 570
>>CCDS43322.1 TRIM23 gene_id:373|Hs108|chr5 (569 aa)
initn: 581 init1: 542 opt: 590 Z-score: 650.5 bits: 128.6 E(32554): 6.5e-30
Smith-Waterman score: 590; 58.9% identity (85.6% similar) in 146 aa overlap (15-159:402-546)
10 20 30 40
pF1KB6 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVT
: ..:.. .:::.:::::::.::: :..
CCDS43 QQFTEVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTILFKLKQDEFMQ
380 390 400 410 420 430
50 60 70 80 90 100
pF1KB6 TIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESA
:::::::::::::::. ::.:::::. :.::::.::. :::...:::::. :.:..:.
CCDS43 PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAH
440 450 460 470 480 490
110 120 130 140 150 160
pF1KB6 DELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLR-SRTWYVQATCATQG
.:: :.: : :::::.::.::::::. .:. : :.:. :.:..: .:.::.:. :
CCDS43 SELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQG-CDARS
500 510 520 530 540 550
170 180
pF1KB6 TGLYDGLDWLSHELSKR
CCDS43 VFQIICDQYTGKEVVTEKG
560
>>CCDS2195.1 ARL5A gene_id:26225|Hs108|chr2 (179 aa)
initn: 537 init1: 523 opt: 560 Z-score: 624.9 bits: 122.2 E(32554): 1.7e-28
Smith-Waterman score: 560; 45.0% identity (75.6% similar) in 180 aa overlap (1-180:1-179)
10 20 30 40 50 60
pF1KB6 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
::. . .. :.:.... ....:::: ::::::::.....:.: : :::: ::: . .:
CCDS21 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV
: .::.:::...: : :. ::. .: ::::.::::.. . .:: ::: ...:: :
CCDS21 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR
::.::::::. . : :.:... : : .... :..:: :: : :: .::.:. .:. :
CCDS21 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR
120 130 140 150 160 170
>>CCDS7131.1 ARL5B gene_id:221079|Hs108|chr10 (179 aa)
initn: 536 init1: 521 opt: 559 Z-score: 623.8 bits: 122.0 E(32554): 2e-28
Smith-Waterman score: 559; 44.4% identity (75.6% similar) in 180 aa overlap (1-180:1-179)
10 20 30 40 50 60
pF1KB6 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
::: . :.: .: ... ....:::: ::::::::.. ..:.: : :::: ::: . ::
CCDS71 MGLIFAKLWS-LFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKN
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV
: .::.:::...: : :..::. .:.:::: ::::. . .:: .:: ...:: :.
CCDS71 THFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAA
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR
.:.::::::: . : ..:.. : :. .... :..:. :: : :: .::.:.. ... :
CCDS71 VLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRIGVR
120 130 140 150 160 170
180 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 14:11:26 2016 done: Fri Nov 4 14:11:27 2016
Total Scan time: 1.820 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]