FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6873, 180 aa
  1>>>pF1KB6873 180 - 180 aa - 180 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9331+/-0.000752; mu= 14.3276+/- 0.045
 mean_var=58.0441+/-11.464, 0's: 0 Z-trim(107.5): 20  B-trim: 0 in 0/49
 Lambda= 0.168343
 statistics sampled from 9580 (9593) to 9580 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.295), width:  16
 Scan time:  1.890

The best scores are:                                      opt bits E(32554)
CCDS35173.1 PAEP gene_id:5047|Hs108|chr9           ( 180) 1214 302.7 7.9e-83


>>CCDS35173.1 PAEP gene_id:5047|Hs108|chr9                (180 aa)
 initn: 1214 init1: 1214 opt: 1214  Z-score: 1600.6  bits: 302.7 E(32554): 7.9e-83
Smith-Waterman score: 1214; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:1-180)

               10        20        30        40        50        60
pF1KB6 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LFLCLQDTTTPIQSMMCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEEPCRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LFLCLQDTTTPIQSMMCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEEPCRF
              130       140       150       160       170       180




180 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:13:35 2016 done: Sat Nov  5 04:13:35 2016
 Total Scan time:  1.890 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]