Result of FASTA (omim) for
pF1KB6873
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6873, 180 aa
1>>>pF1KB6873 180 - 180 aa - 180 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8120+/-0.000345; mu= 14.9879+/- 0.021
mean_var=56.9774+/-11.296, 0's: 0 Z-trim(114.1): 36 B-trim: 40 in 1/51
Lambda= 0.169912
statistics sampled from 23709 (23745) to 23709 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.278), width: 16
Scan time: 5.610
The best scores are: opt bits E(85289)
NP_002562 (OMIM: 173310) glycodelin isoform 1 prec ( 180) 1214 305.5 3.1e-83
NP_001018059 (OMIM: 173310) glycodelin isoform 1 p ( 180) 1214 305.5 3.1e-83
XP_011517051 (OMIM: 173310) PREDICTED: glycodelin ( 180) 1214 305.5 3.1e-83
XP_011517049 (OMIM: 173310) PREDICTED: glycodelin ( 204) 932 236.4 2.2e-62
XP_011517047 (OMIM: 173310) PREDICTED: glycodelin ( 204) 932 236.4 2.2e-62
XP_011517048 (OMIM: 173310) PREDICTED: glycodelin ( 204) 932 236.4 2.2e-62
NP_001018058 (OMIM: 173310) glycodelin isoform 2 p ( 158) 867 220.4 1.1e-57
XP_011517053 (OMIM: 173310) PREDICTED: glycodelin ( 158) 867 220.4 1.1e-57
XP_011517054 (OMIM: 173310) PREDICTED: glycodelin ( 143) 684 175.5 3.3e-44
XP_016870272 (OMIM: 173310) PREDICTED: glycodelin ( 103) 681 174.6 4.2e-44
XP_011517050 (OMIM: 173310) PREDICTED: glycodelin ( 182) 585 151.3 8.1e-37
XP_016870271 (OMIM: 173310) PREDICTED: glycodelin ( 110) 285 77.6 7.4e-15
NP_001001676 (OMIM: 612903) epididymal-specific li ( 176) 171 49.8 2.8e-06
XP_016870201 (OMIM: 612903) PREDICTED: epididymal- ( 227) 171 49.8 3.5e-06
NP_001332863 (OMIM: 612902) epididymal-specific li ( 175) 136 41.2 0.0011
XP_016869761 (OMIM: 612902) PREDICTED: epididymal- ( 182) 136 41.2 0.0011
NP_848564 (OMIM: 612902) epididymal-specific lipoc ( 152) 134 40.7 0.0013
NP_001624 (OMIM: 176870) protein AMBP preproprotei ( 352) 138 41.9 0.0013
NP_055397 (OMIM: 164320) odorant-binding protein 2 ( 170) 123 38.0 0.0095
>>NP_002562 (OMIM: 173310) glycodelin isoform 1 precurso (180 aa)
initn: 1214 init1: 1214 opt: 1214 Z-score: 1615.3 bits: 305.5 E(85289): 3.1e-83
Smith-Waterman score: 1214; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:1-180)
10 20 30 40 50 60
pF1KB6 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LFLCLQDTTTPIQSMMCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEEPCRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LFLCLQDTTTPIQSMMCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEEPCRF
130 140 150 160 170 180
>>NP_001018059 (OMIM: 173310) glycodelin isoform 1 precu (180 aa)
initn: 1214 init1: 1214 opt: 1214 Z-score: 1615.3 bits: 305.5 E(85289): 3.1e-83
Smith-Waterman score: 1214; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:1-180)
10 20 30 40 50 60
pF1KB6 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LFLCLQDTTTPIQSMMCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEEPCRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LFLCLQDTTTPIQSMMCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEEPCRF
130 140 150 160 170 180
>>XP_011517051 (OMIM: 173310) PREDICTED: glycodelin isof (180 aa)
initn: 1214 init1: 1214 opt: 1214 Z-score: 1615.3 bits: 305.5 E(85289): 3.1e-83
Smith-Waterman score: 1214; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:1-180)
10 20 30 40 50 60
pF1KB6 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LFLCLQDTTTPIQSMMCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEEPCRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LFLCLQDTTTPIQSMMCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEEPCRF
130 140 150 160 170 180
>>XP_011517049 (OMIM: 173310) PREDICTED: glycodelin isof (204 aa)
initn: 1203 init1: 932 opt: 932 Z-score: 1240.9 bits: 236.4 E(85289): 2.2e-62
Smith-Waterman score: 1156; 88.2% identity (88.2% similar) in 204 aa overlap (1-180:1-204)
10 20 30 40 50 60
pF1KB6 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
70 80 90 100 110 120
130 140 150
pF1KB6 LFLCLQDTTTPIQSMMCQYL------------------------ARVLVEDDEIMQGFIR
:::::::::::::::::::: ::::::::::::::::
XP_011 LFLCLQDTTTPIQSMMCQYLGKASGAPQLSWKPQGPRTDPASSTARVLVEDDEIMQGFIR
130 140 150 160 170 180
160 170 180
pF1KB6 AFRPLPRHLWYLLDLKQMEEPCRF
::::::::::::::::::::::::
XP_011 AFRPLPRHLWYLLDLKQMEEPCRF
190 200
>>XP_011517047 (OMIM: 173310) PREDICTED: glycodelin isof (204 aa)
initn: 1203 init1: 932 opt: 932 Z-score: 1240.9 bits: 236.4 E(85289): 2.2e-62
Smith-Waterman score: 1156; 88.2% identity (88.2% similar) in 204 aa overlap (1-180:1-204)
10 20 30 40 50 60
pF1KB6 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
70 80 90 100 110 120
130 140 150
pF1KB6 LFLCLQDTTTPIQSMMCQYL------------------------ARVLVEDDEIMQGFIR
:::::::::::::::::::: ::::::::::::::::
XP_011 LFLCLQDTTTPIQSMMCQYLGKASGAPQLSWKPQGPRTDPASSTARVLVEDDEIMQGFIR
130 140 150 160 170 180
160 170 180
pF1KB6 AFRPLPRHLWYLLDLKQMEEPCRF
::::::::::::::::::::::::
XP_011 AFRPLPRHLWYLLDLKQMEEPCRF
190 200
>>XP_011517048 (OMIM: 173310) PREDICTED: glycodelin isof (204 aa)
initn: 1203 init1: 932 opt: 932 Z-score: 1240.9 bits: 236.4 E(85289): 2.2e-62
Smith-Waterman score: 1156; 88.2% identity (88.2% similar) in 204 aa overlap (1-180:1-204)
10 20 30 40 50 60
pF1KB6 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
70 80 90 100 110 120
130 140 150
pF1KB6 LFLCLQDTTTPIQSMMCQYL------------------------ARVLVEDDEIMQGFIR
:::::::::::::::::::: ::::::::::::::::
XP_011 LFLCLQDTTTPIQSMMCQYLGKASGAPQLSWKPQGPRTDPASSTARVLVEDDEIMQGFIR
130 140 150 160 170 180
160 170 180
pF1KB6 AFRPLPRHLWYLLDLKQMEEPCRF
::::::::::::::::::::::::
XP_011 AFRPLPRHLWYLLDLKQMEEPCRF
190 200
>>NP_001018058 (OMIM: 173310) glycodelin isoform 2 precu (158 aa)
initn: 867 init1: 867 opt: 867 Z-score: 1156.4 bits: 220.4 E(85289): 1.1e-57
Smith-Waterman score: 1021; 87.8% identity (87.8% similar) in 180 aa overlap (1-180:1-158)
10 20 30 40 50 60
pF1KB6 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
:::::::::::::::::::::::::::::::: ::::::
NP_001 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPK----------------------APLRVH
10 20 30
70 80 90 100 110 120
pF1KB6 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 LFLCLQDTTTPIQSMMCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEEPCRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LFLCLQDTTTPIQSMMCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEEPCRF
100 110 120 130 140 150
>>XP_011517053 (OMIM: 173310) PREDICTED: glycodelin isof (158 aa)
initn: 867 init1: 867 opt: 867 Z-score: 1156.4 bits: 220.4 E(85289): 1.1e-57
Smith-Waterman score: 1021; 87.8% identity (87.8% similar) in 180 aa overlap (1-180:1-158)
10 20 30 40 50 60
pF1KB6 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
:::::::::::::::::::::::::::::::: ::::::
XP_011 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPK----------------------APLRVH
10 20 30
70 80 90 100 110 120
pF1KB6 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 LFLCLQDTTTPIQSMMCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEEPCRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LFLCLQDTTTPIQSMMCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEEPCRF
100 110 120 130 140 150
>>XP_011517054 (OMIM: 173310) PREDICTED: glycodelin isof (143 aa)
initn: 683 init1: 683 opt: 684 Z-score: 914.6 bits: 175.5 E(85289): 3.3e-44
Smith-Waterman score: 878; 78.9% identity (79.4% similar) in 180 aa overlap (1-180:1-143)
10 20 30 40 50 60
pF1KB6 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
:::::::::::::::::::::::::::::::::::::::::::
XP_011 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKIN-----------------
70 80 90 100
130 140 150 160 170 180
pF1KB6 LFLCLQDTTTPIQSMMCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEEPCRF
.:::::::::::::::::::::::::::::::::::::::
XP_011 --------------------SRVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEEPCRF
110 120 130 140
>>XP_016870272 (OMIM: 173310) PREDICTED: glycodelin isof (103 aa)
initn: 681 init1: 681 opt: 681 Z-score: 912.8 bits: 174.6 E(85289): 4.2e-44
Smith-Waterman score: 681; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)
10 20 30 40 50 60
pF1KB6 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
:::::::::::::::::::::::::::::::::::::::::::
XP_016 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKIN
70 80 90 100
130 140 150 160 170 180
pF1KB6 LFLCLQDTTTPIQSMMCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEEPCRF
180 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 04:13:36 2016 done: Sat Nov 5 04:13:37 2016
Total Scan time: 5.610 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]