FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6874, 198 aa
  1>>>pF1KB6874 198 - 198 aa - 198 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8041+/-0.000719; mu= 11.8129+/- 0.043
 mean_var=82.4422+/-16.038, 0's: 0 Z-trim(110.5): 21  B-trim: 0 in 0/53
 Lambda= 0.141254
 statistics sampled from 11661 (11667) to 11661 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.358), width:  16
 Scan time:  1.680

The best scores are:                                      opt bits E(32554)
CCDS13350.1 SDC4 gene_id:6385|Hs108|chr20          ( 198) 1275 268.7 1.6e-72
CCDS6272.1 SDC2 gene_id:6383|Hs108|chr8            ( 201)  359 82.1 2.5e-16


>>CCDS13350.1 SDC4 gene_id:6385|Hs108|chr20               (198 aa)
 initn: 1275 init1: 1275 opt: 1275  Z-score: 1415.4  bits: 268.7 E(32554): 1.6e-72
Smith-Waterman score: 1275; 99.5% identity (100.0% similar) in 198 aa overlap (1-198:1-198)

               10        20        30        40        50        60
pF1KB6 MAPARLFALLLLFVGGVAESIRETEVIDPQDLLEGRYFSGALPDDEDVVGPGQESDDFEL
       :::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAPARLFALLLFFVGGVAESIRETEVIDPQDLLEGRYFSGALPDDEDVVGPGQESDDFEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SGSGDLDDLEDSMIGPEVVHPLVPLDNHIPERAGSGSQVPTEPKKLEENEVIPKRISPVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SGSGDLDDLEDSMIGPEVVHPLVPLDNHIPERAGSGSQVPTEPKKLEENEVIPKRISPVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ESEDVSNKVSMSSTVQGSNIFERTEVLAALIVGGIVGILFAVFLILLLMYRMKKKDEGSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ESEDVSNKVSMSSTVQGSNIFERTEVLAALIVGGIVGILFAVFLILLLMYRMKKKDEGSY
              130       140       150       160       170       180

              190        
pF1KB6 DLGKKPIYKKAPTNEFYA
       ::::::::::::::::::
CCDS13 DLGKKPIYKKAPTNEFYA
              190        

>>CCDS6272.1 SDC2 gene_id:6383|Hs108|chr8                 (201 aa)
 initn: 322 init1: 229 opt: 359  Z-score: 406.5  bits: 82.1 E(32554): 2.5e-16
Smith-Waterman score: 371; 39.1% identity (66.2% similar) in 207 aa overlap (8-198:4-201)

               10        20          30            40            50
pF1KB6 MAPARLFALLLLFVGGVAESIRET--EVIDPQDL-LEGRYF---SGALP-DDEDVV---G
              : .:: .: ::    :.  :. . .:. :..  .   ::. : ::.: .   :
CCDS62     MRRAWILLTLGLVACVSAESRAELTSDKDMYLDNSSIEEASGVYPIDDDDYASASG
                   10        20        30        40        50      

                 60        70        80        90       100        
pF1KB6 PGQESD--DFELSGSGDLDDLEDSMIGPEVVHPLVPLDNHIPERAGSGSQVPTEPKKLEE
        : . :  . ::. :  :  .  .  .:.:    . ..:.:: .. :  ..  :  .: .
CCDS62 SGADEDVESPELTTSRPLPKILLTSAAPKVETTTLNIQNKIPAQTKSPEETDKEKVHLSD
         60        70        80        90       100       110      

      110       120       130       140       150       160        
pF1KB6 NEVIPKRISPVEESEDVSNKVSMSSTVQGSNIFERTEVLAALIVGGIVGILFAVFLILLL
       .:   ....:.::. .:       .  .....:.:::::::.:.::..:.:::.::::::
CCDS62 SE---RKMDPAEEDTNVY------TEKHSDSLFKRTEVLAAVIAGGVIGFLFAIFLILLL
           120       130             140       150       160       

      170       180           190        
pF1KB6 MYRMKKKDEGSYDLG-KKP---IYKKAPTNEFYA
       .:::.:::::::::: .::    :.::::.::::
CCDS62 VYRMRKKDEGSYDLGERKPSSAAYQKAPTKEFYA
       170       180       190       200 




198 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:07:48 2016 done: Sat Nov  5 00:07:49 2016
 Total Scan time:  1.680 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]