FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6879, 180 aa
  1>>>pF1KB6879 180 - 180 aa - 180 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2224+/-0.000281; mu= 12.0128+/- 0.018
 mean_var=166.2485+/-34.643, 0's: 0 Z-trim(124.0): 81  B-trim: 2237 in 1/58
 Lambda= 0.099471
 statistics sampled from 44704 (44834) to 44704 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.843), E-opt: 0.2 (0.526), width:  16
 Scan time:  5.640

The best scores are:                                      opt bits E(85289)
NP_008844 (OMIM: 602677) E3 ubiquitin-protein liga ( 180) 1320 199.8   2e-51


>>NP_008844 (OMIM: 602677) E3 ubiquitin-protein ligase R  (180 aa)
 initn: 1320 init1: 1320 opt: 1320  Z-score: 1044.4  bits: 199.8 E(85289): 2e-51
Smith-Waterman score: 1320; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:1-180)

               10        20        30        40        50        60
pF1KB6 MAAAEEEDGGPEGPNRERGGAGATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 MAAAEEEDGGPEGPNRERGGAGATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 RQECPVCKAGISREKVVPLYGRGSQKPQDPRLKTPPRPQGQRPAPESRGGFQPFGDTGGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 RQECPVCKAGISREKVVPLYGRGSQKPQDPRLKTPPRPQGQRPAPESRGGFQPFGDTGGF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 HFSFGVGAFPFGFFTTVFNAHEPFRRGTGVDLGQGHPASSWQDSLFLFLAIFFFFWLLSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 HFSFGVGAFPFGFFTTVFNAHEPFRRGTGVDLGQGHPASSWQDSLFLFLAIFFFFWLLSI
              130       140       150       160       170       180




180 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:24:01 2016 done: Sat Nov  5 00:24:02 2016
 Total Scan time:  5.640 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]