Result of FASTA (ccds) for
pF1KB6880
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6880, 201 aa
1>>>pF1KB6880 201 - 201 aa - 201 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4628+/-0.000643; mu= 13.1851+/- 0.039
mean_var=74.9748+/-14.411, 0's: 0 Z-trim(112.0): 8 B-trim: 4 in 1/53
Lambda= 0.148121
statistics sampled from 12788 (12793) to 12788 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.764), E-opt: 0.2 (0.393), width: 16
Scan time: 2.250
The best scores are: opt bits E(32554)
CCDS8671.1 ARHGDIB gene_id:397|Hs108|chr12 ( 201) 1348 296.5 7.1e-81
CCDS11788.1 ARHGDIA gene_id:396|Hs108|chr17 ( 204) 938 208.9 1.7e-54
CCDS10404.1 ARHGDIG gene_id:398|Hs108|chr16 ( 225) 763 171.6 3.4e-43
CCDS77133.1 ARHGDIA gene_id:396|Hs108|chr17 ( 235) 738 166.2 1.4e-41
CCDS58609.1 ARHGDIA gene_id:396|Hs108|chr17 ( 160) 567 129.6 1e-30
>>CCDS8671.1 ARHGDIB gene_id:397|Hs108|chr12 (201 aa)
initn: 1348 init1: 1348 opt: 1348 Z-score: 1565.4 bits: 296.5 E(32554): 7.1e-81
Smith-Waterman score: 1348; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201)
10 20 30 40 50 60
pF1KB6 MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGPVVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGPVVT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 DPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 DPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 SGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTD
130 140 150 160 170 180
190 200
pF1KB6 DDKQDHLSWEWNLSIKKEWTE
:::::::::::::::::::::
CCDS86 DDKQDHLSWEWNLSIKKEWTE
190 200
>>CCDS11788.1 ARHGDIA gene_id:396|Hs108|chr17 (204 aa)
initn: 958 init1: 925 opt: 938 Z-score: 1091.8 bits: 208.9 E(32554): 1.7e-54
Smith-Waterman score: 938; 67.0% identity (85.0% similar) in 206 aa overlap (1-201:1-204)
10 20 30 40 50
pF1KB6 MTEKAPEPH-----VEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGD
:.:. : . . :...:: ..::::: :::..:.::.::::::: :::..:::
CCDS11 MAEQEPTAEQLAQIAAENEEDE--HSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGR
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 GPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKV
: .::..:::::: ::::: :::::. .:::::::..::...::::: :::.:: :.:
CCDS11 VAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 NRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNK
::.::::.::.::::: :::.::. .:::::::: ::::::::::::::::::::.: :
CCDS11 NREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIK
120 130 140 150 160 170
180 190 200
pF1KB6 SFFTDDDKQDHLSWEWNLSIKKEWTE
: :::::: :::::::::.:::.: .
CCDS11 SRFTDDDKTDHLSWEWNLTIKKDWKD
180 190 200
>>CCDS10404.1 ARHGDIG gene_id:398|Hs108|chr16 (225 aa)
initn: 757 init1: 736 opt: 763 Z-score: 889.1 bits: 171.6 E(32554): 3.4e-43
Smith-Waterman score: 763; 57.8% identity (80.4% similar) in 199 aa overlap (3-201:31-225)
10 20 30
pF1KB6 MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSL
: .: : :.: :. . .:. : .:::
CCDS10 MLGLDACELGAQLLELLRLALCARVLLADKEGGP-PAVDEVLDEAVP---EYRAPGRKSL
10 20 30 40 50
40 50 60 70 80 90
pF1KB6 KELQEMDKDDESLIKYKKTLLGDGPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLE
:....: ::.:: :::..::: : ..::. ::: ::::::. :.::::..:::::::
CCDS10 LEIRQLDPDDRSLAKYKRVLLGPLPPAVDPSLPNVQVTRLTLLSEQAPGPVVMDLTGDLA
60 70 80 90 100 110
100 110 120 130 140 150
pF1KB6 ALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEE
.:: ...::::: .::::: :::.:.:::::: ..:::: :..:::...::::::: .:
CCDS10 VLKDQVFVLKEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMVGSYGPSAQE
120 130 140 150 160 170
160 170 180 190 200
pF1KB6 YEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKKEWTE
:::.:::::::.: :.:: : :.:::::. ::::::.: : ..: .
CCDS10 YEFVTPVEEAPRGALVRGPYLVVSLFTDDDRTHHLSWEWGLCICQDWKD
180 190 200 210 220
>>CCDS77133.1 ARHGDIA gene_id:396|Hs108|chr17 (235 aa)
initn: 758 init1: 725 opt: 738 Z-score: 859.9 bits: 166.2 E(32554): 1.4e-41
Smith-Waterman score: 738; 64.2% identity (84.4% similar) in 173 aa overlap (1-168:1-171)
10 20 30 40 50
pF1KB6 MTEKAPEPH-----VEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGD
:.:. : . . :...:: ..::::: :::..:.::.::::::: :::..:::
CCDS77 MAEQEPTAEQLAQIAAENEEDE--HSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGR
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 GPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKV
: .::..:::::: ::::: :::::. .:::::::..::...::::: :::.:: :.:
CCDS77 VAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 NRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNK
::.::::.::.::::: :::.::. .:::::::: ::::::::::::::: ..
CCDS77 NREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGSISPSHPRPG
120 130 140 150 160 170
180 190 200
pF1KB6 SFFTDDDKQDHLSWEWNLSIKKEWTE
CCDS77 FRRERSSHSPGPVVAPGRVRLLLRGGAGVWDARPRGGRAVLQPRCSLASPLVAVGPV
180 190 200 210 220 230
>>CCDS58609.1 ARHGDIA gene_id:396|Hs108|chr17 (160 aa)
initn: 707 init1: 554 opt: 567 Z-score: 664.9 bits: 129.6 E(32554): 1e-30
Smith-Waterman score: 597; 49.5% identity (66.0% similar) in 206 aa overlap (1-201:1-160)
10 20 30 40 50
pF1KB6 MTEKAPEPH-----VEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGD
:.:. : . . :...:: ..::::: :::..:.::.::::::: :::..:::
CCDS58 MAEQEPTAEQLAQIAAENEEDE--HSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGR
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 GPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKV
: .::..:::::: ::::: :::::. .:::::::..::...::::: :::.:: :.:
CCDS58 VAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 NRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNK
::.::::.::.::::: :::
CCDS58 NREIVSGMKYIQHTYRKGVK----------------------------------------
120 130
180 190 200
pF1KB6 SFFTDDDKQDHLSWEWNLSIKKEWTE
.::: :::::::::.:::.: .
CCDS58 ----NDDKTDHLSWEWNLTIKKDWKD
140 150 160
201 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 00:24:39 2016 done: Sat Nov 5 00:24:39 2016
Total Scan time: 2.250 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]