FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6882, 201 aa
  1>>>pF1KB6882 201 - 201 aa - 201 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1943+/-0.000702; mu= 12.9918+/- 0.042
 mean_var=55.2684+/-10.811, 0's: 0 Z-trim(108.0): 17  B-trim: 0 in 0/51
 Lambda= 0.172519
 statistics sampled from 9916 (9926) to 9916 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.305), width:  16
 Scan time:  2.000

The best scores are:                                      opt bits E(32554)
CCDS31249.1 RBP4 gene_id:5950|Hs108|chr10          ( 201) 1390 353.7 4.4e-98
CCDS81488.1 RBP4 gene_id:5950|Hs108|chr10          ( 199) 1270 323.8 4.2e-89


>>CCDS31249.1 RBP4 gene_id:5950|Hs108|chr10               (201 aa)
 initn: 1390 init1: 1390 opt: 1390  Z-score: 1874.4  bits: 353.7 E(32554): 4.4e-98
Smith-Waterman score: 1390; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201)

               10        20        30        40        50        60
pF1KB6 MKWVWALLLLAALGSGRAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MKWVWALLLLAALGSGRAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 AEFSVDETGQMSATAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AEFSVDETGQMSATAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGND
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 DHWIVDTDYDTYAVQYSCRLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DHWIVDTDYDTYAVQYSCRLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLA
              130       140       150       160       170       180

              190       200 
pF1KB6 RQYRLIVHNGYCDGRSERNLL
       :::::::::::::::::::::
CCDS31 RQYRLIVHNGYCDGRSERNLL
              190       200 

>>CCDS81488.1 RBP4 gene_id:5950|Hs108|chr10               (199 aa)
 initn: 1270 init1: 1270 opt: 1270  Z-score: 1713.1  bits: 323.8 E(32554): 4.2e-89
Smith-Waterman score: 1270; 98.9% identity (100.0% similar) in 185 aa overlap (17-201:15-199)

               10        20        30        40        50        60
pF1KB6 MKWVWALLLLAALGSGRAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIV
                       ..::::::::::::::::::::::::::::::::::::::::::
CCDS81   MNYSKIPAQVDLRRQTERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIV
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KB6 AEFSVDETGQMSATAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 AEFSVDETGQMSATAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGND
       60        70        80        90       100       110        

              130       140       150       160       170       180
pF1KB6 DHWIVDTDYDTYAVQYSCRLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 DHWIVDTDYDTYAVQYSCRLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLA
      120       130       140       150       160       170        

              190       200 
pF1KB6 RQYRLIVHNGYCDGRSERNLL
       :::::::::::::::::::::
CCDS81 RQYRLIVHNGYCDGRSERNLL
      180       190         




201 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:42:08 2016 done: Sat Nov  5 17:42:08 2016
 Total Scan time:  2.000 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]