FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6882, 201 aa
  1>>>pF1KB6882 201 - 201 aa - 201 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9459+/-0.000327; mu= 14.5226+/- 0.020
 mean_var=57.3682+/-11.164, 0's: 0 Z-trim(114.7): 19  B-trim: 0 in 0/52
 Lambda= 0.169332
 statistics sampled from 24670 (24686) to 24670 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.289), width:  16
 Scan time:  5.900

The best scores are:                                      opt bits E(85289)
NP_001310446 (OMIM: 180250,615147,616428) retinol- ( 201) 1390 347.5 8.3e-96
NP_006735 (OMIM: 180250,615147,616428) retinol-bin ( 201) 1390 347.5 8.3e-96
NP_001310447 (OMIM: 180250,615147,616428) retinol- ( 199) 1270 318.2 5.5e-87
NP_001638 (OMIM: 107740) apolipoprotein D precurso ( 189)  195 55.6   6e-08


>>NP_001310446 (OMIM: 180250,615147,616428) retinol-bind  (201 aa)
 initn: 1390 init1: 1390 opt: 1390  Z-score: 1841.0  bits: 347.5 E(85289): 8.3e-96
Smith-Waterman score: 1390; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201)

               10        20        30        40        50        60
pF1KB6 MKWVWALLLLAALGSGRAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKWVWALLLLAALGSGRAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 AEFSVDETGQMSATAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AEFSVDETGQMSATAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGND
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 DHWIVDTDYDTYAVQYSCRLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DHWIVDTDYDTYAVQYSCRLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLA
              130       140       150       160       170       180

              190       200 
pF1KB6 RQYRLIVHNGYCDGRSERNLL
       :::::::::::::::::::::
NP_001 RQYRLIVHNGYCDGRSERNLL
              190       200 

>>NP_006735 (OMIM: 180250,615147,616428) retinol-binding  (201 aa)
 initn: 1390 init1: 1390 opt: 1390  Z-score: 1841.0  bits: 347.5 E(85289): 8.3e-96
Smith-Waterman score: 1390; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201)

               10        20        30        40        50        60
pF1KB6 MKWVWALLLLAALGSGRAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MKWVWALLLLAALGSGRAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 AEFSVDETGQMSATAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 AEFSVDETGQMSATAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGND
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 DHWIVDTDYDTYAVQYSCRLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 DHWIVDTDYDTYAVQYSCRLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLA
              130       140       150       160       170       180

              190       200 
pF1KB6 RQYRLIVHNGYCDGRSERNLL
       :::::::::::::::::::::
NP_006 RQYRLIVHNGYCDGRSERNLL
              190       200 

>>NP_001310447 (OMIM: 180250,615147,616428) retinol-bind  (199 aa)
 initn: 1270 init1: 1270 opt: 1270  Z-score: 1682.7  bits: 318.2 E(85289): 5.5e-87
Smith-Waterman score: 1270; 98.9% identity (100.0% similar) in 185 aa overlap (17-201:15-199)

               10        20        30        40        50        60
pF1KB6 MKWVWALLLLAALGSGRAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIV
                       ..::::::::::::::::::::::::::::::::::::::::::
NP_001   MNYSKIPAQVDLRRQTERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIV
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KB6 AEFSVDETGQMSATAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AEFSVDETGQMSATAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGND
       60        70        80        90       100       110        

              130       140       150       160       170       180
pF1KB6 DHWIVDTDYDTYAVQYSCRLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DHWIVDTDYDTYAVQYSCRLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLA
      120       130       140       150       160       170        

              190       200 
pF1KB6 RQYRLIVHNGYCDGRSERNLL
       :::::::::::::::::::::
NP_001 RQYRLIVHNGYCDGRSERNLL
      180       190         

>>NP_001638 (OMIM: 107740) apolipoprotein D precursor [H  (189 aa)
 initn: 188 init1:  81 opt: 195  Z-score: 263.7  bits: 55.6 E(85289): 6e-08
Smith-Waterman score: 195; 29.9% identity (59.8% similar) in 174 aa overlap (4-165:2-158)

               10              20        30        40        50    
pF1KB6 MKWVWALLLLAALGS------GRAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLF
          :  ::::.::..      :.: .  .  .  :.::::  .. : :: . .: :  . 
NP_001   MVMLLLLLSALAGLFGAAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEI-EKIPTTFE
                 10        20        30        40         50       

           60        70        80         90       100        110  
pF1KB6 LQDNIVAEFSVDETGQMSATAKGRVRLLNNWDVCA-DMVGTFTDTEDPAKFKMKY-WGVA
           : :..:. :.:....  .   .:  .  :   .  .: ..  .:::...:. :   
NP_001 NGRCIQANYSLMENGKIKVLNQ---ELRADGTVNQIEGEATPVNLTEPAKLEVKFSW---
        60        70           80        90       100       110    

            120       130           140       150       160        
pF1KB6 SFLQKGNDDHWIVDTDYDTYAVQYSC----RLLNLDGTCADSYSFVFSRDPNGLPPEAQK
        :. ..   .::. :::..::. :::    .:...:      ......:.:: ::::   
NP_001 -FMPSA--PYWILATDYENYALVYSCTCIIQLFHVD------FAWILARNPN-LPPETVD
                120       130       140             150        160 

      170       180       190       200 
pF1KB6 IVRQRQEELCLARQYRLIVHNGYCDGRSERNLL
                                        
NP_001 SLKNILTSNNIDVKKMTVTDQVNCPKLS     
             170       180              




201 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:42:09 2016 done: Sat Nov  5 17:42:10 2016
 Total Scan time:  5.900 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]