FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6886, 191 aa
  1>>>pF1KB6886 191 - 191 aa - 191 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3217+/-0.000699; mu= 9.8650+/- 0.042
 mean_var=101.0426+/-20.167, 0's: 0 Z-trim(113.2): 5  B-trim: 573 in 1/51
 Lambda= 0.127592
 statistics sampled from 13851 (13854) to 13851 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.777), E-opt: 0.2 (0.426), width:  16
 Scan time:  2.250

The best scores are:                                      opt bits E(32554)
CCDS59196.1 MEAF6 gene_id:64769|Hs108|chr1         ( 191) 1248 239.0 1.3e-63
CCDS59195.1 MEAF6 gene_id:64769|Hs108|chr1         ( 192) 1167 224.1 4.1e-59
CCDS418.1 MEAF6 gene_id:64769|Hs108|chr1           ( 201) 1155 221.9   2e-58


>>CCDS59196.1 MEAF6 gene_id:64769|Hs108|chr1              (191 aa)
 initn: 1248 init1: 1248 opt: 1248  Z-score: 1255.4  bits: 239.0 E(32554): 1.3e-63
Smith-Waterman score: 1248; 100.0% identity (100.0% similar) in 191 aa overlap (1-191:1-191)

               10        20        30        40        50        60
pF1KB6 MAMHNKAAPPQIPDTRRELAELVKRKQELAETLANLERQIYAFEGSYLEDTQMYGNIIRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MAMHNKAAPPQIPDTRRELAELVKRKQELAETLANLERQIYAFEGSYLEDTQMYGNIIRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 WDRYLTNQKNSNSKNDRRNRKFKEAERLFSKSSVTSAAAVSALAGVQDQLIEKREPGSGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 WDRYLTNQKNSNSKNDRRNRKFKEAERLFSKSSVTSAAAVSALAGVQDQLIEKREPGSGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ESDTSPDFHNQENEPSQEDPEDLDGSVQGVKPQKAASSTSSGSHHSSHKKRKNKNRHRID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ESDTSPDFHNQENEPSQEDPEDLDGSVQGVKPQKAASSTSSGSHHSSHKKRKNKNRHRID
              130       140       150       160       170       180

              190 
pF1KB6 LKLNKKPRADY
       :::::::::::
CCDS59 LKLNKKPRADY
              190 

>>CCDS59195.1 MEAF6 gene_id:64769|Hs108|chr1              (192 aa)
 initn: 1167 init1: 1167 opt: 1167  Z-score: 1174.7  bits: 224.1 E(32554): 4.1e-59
Smith-Waterman score: 1167; 98.3% identity (100.0% similar) in 181 aa overlap (1-181:1-181)

               10        20        30        40        50        60
pF1KB6 MAMHNKAAPPQIPDTRRELAELVKRKQELAETLANLERQIYAFEGSYLEDTQMYGNIIRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MAMHNKAAPPQIPDTRRELAELVKRKQELAETLANLERQIYAFEGSYLEDTQMYGNIIRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 WDRYLTNQKNSNSKNDRRNRKFKEAERLFSKSSVTSAAAVSALAGVQDQLIEKREPGSGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 WDRYLTNQKNSNSKNDRRNRKFKEAERLFSKSSVTSAAAVSALAGVQDQLIEKREPGSGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ESDTSPDFHNQENEPSQEDPEDLDGSVQGVKPQKAASSTSSGSHHSSHKKRKNKNRHRID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::..
CCDS59 ESDTSPDFHNQENEPSQEDPEDLDGSVQGVKPQKAASSTSSGSHHSSHKKRKNKNRHRMN
              130       140       150       160       170       180

              190  
pF1KB6 LKLNKKPRADY 
       .           
CCDS59 VSPKTGWHQLHL
              190  

>>CCDS418.1 MEAF6 gene_id:64769|Hs108|chr1                (201 aa)
 initn: 1227 init1: 1155 opt: 1155  Z-score: 1162.5  bits: 221.9 E(32554): 2e-58
Smith-Waterman score: 1211; 94.5% identity (95.0% similar) in 201 aa overlap (1-191:1-201)

               10        20        30        40        50        60
pF1KB6 MAMHNKAAPPQIPDTRRELAELVKRKQELAETLANLERQIYAFEGSYLEDTQMYGNIIRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MAMHNKAAPPQIPDTRRELAELVKRKQELAETLANLERQIYAFEGSYLEDTQMYGNIIRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 WDRYLTNQKNSNSKNDRRNRKFKEAERLFSKSSVTSAAAVSALAGVQDQLIEKREPGSGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 WDRYLTNQKNSNSKNDRRNRKFKEAERLFSKSSVTSAAAVSALAGVQDQLIEKREPGSGT
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KB6 ESDTSPDFHNQENEPSQEDPEDLDGSVQGVKPQKAASSTSSGSHHSSHKKRKNKNRH---
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
CCDS41 ESDTSPDFHNQENEPSQEDPEDLDGSVQGVKPQKAASSTSSGSHHSSHKKRKNKNRHSPS
              130       140       150       160       170       180

              180       190 
pF1KB6 -------RIDLKLNKKPRADY
              .:::::::::::::
CCDS41 GMFDYDFEIDLKLNKKPRADY
              190       200 




191 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:08:25 2016 done: Sat Nov  5 00:08:26 2016
 Total Scan time:  2.250 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]