FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6886, 191 aa
  1>>>pF1KB6886 191 - 191 aa - 191 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7095+/-0.000279; mu= 7.6949+/- 0.018
 mean_var=105.6445+/-20.880, 0's: 0 Z-trim(120.9): 3  B-trim: 0 in 0/53
 Lambda= 0.124782
 statistics sampled from 36842 (36845) to 36842 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.779), E-opt: 0.2 (0.432), width:  16
 Scan time:  6.590

The best scores are:                                      opt bits E(85289)
NP_001257804 (OMIM: 611001) chromatin modification ( 191) 1248 234.1   1e-61
NP_001257805 (OMIM: 611001) chromatin modification ( 192) 1167 219.6 2.5e-57
NP_073593 (OMIM: 611001) chromatin modification-re ( 201) 1155 217.4 1.2e-56


>>NP_001257804 (OMIM: 611001) chromatin modification-rel  (191 aa)
 initn: 1248 init1: 1248 opt: 1248  Z-score: 1229.0  bits: 234.1 E(85289): 1e-61
Smith-Waterman score: 1248; 100.0% identity (100.0% similar) in 191 aa overlap (1-191:1-191)

               10        20        30        40        50        60
pF1KB6 MAMHNKAAPPQIPDTRRELAELVKRKQELAETLANLERQIYAFEGSYLEDTQMYGNIIRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAMHNKAAPPQIPDTRRELAELVKRKQELAETLANLERQIYAFEGSYLEDTQMYGNIIRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 WDRYLTNQKNSNSKNDRRNRKFKEAERLFSKSSVTSAAAVSALAGVQDQLIEKREPGSGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WDRYLTNQKNSNSKNDRRNRKFKEAERLFSKSSVTSAAAVSALAGVQDQLIEKREPGSGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ESDTSPDFHNQENEPSQEDPEDLDGSVQGVKPQKAASSTSSGSHHSSHKKRKNKNRHRID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ESDTSPDFHNQENEPSQEDPEDLDGSVQGVKPQKAASSTSSGSHHSSHKKRKNKNRHRID
              130       140       150       160       170       180

              190 
pF1KB6 LKLNKKPRADY
       :::::::::::
NP_001 LKLNKKPRADY
              190 

>>NP_001257805 (OMIM: 611001) chromatin modification-rel  (192 aa)
 initn: 1167 init1: 1167 opt: 1167  Z-score: 1150.1  bits: 219.6 E(85289): 2.5e-57
Smith-Waterman score: 1167; 98.3% identity (100.0% similar) in 181 aa overlap (1-181:1-181)

               10        20        30        40        50        60
pF1KB6 MAMHNKAAPPQIPDTRRELAELVKRKQELAETLANLERQIYAFEGSYLEDTQMYGNIIRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAMHNKAAPPQIPDTRRELAELVKRKQELAETLANLERQIYAFEGSYLEDTQMYGNIIRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 WDRYLTNQKNSNSKNDRRNRKFKEAERLFSKSSVTSAAAVSALAGVQDQLIEKREPGSGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WDRYLTNQKNSNSKNDRRNRKFKEAERLFSKSSVTSAAAVSALAGVQDQLIEKREPGSGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ESDTSPDFHNQENEPSQEDPEDLDGSVQGVKPQKAASSTSSGSHHSSHKKRKNKNRHRID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::..
NP_001 ESDTSPDFHNQENEPSQEDPEDLDGSVQGVKPQKAASSTSSGSHHSSHKKRKNKNRHRMN
              130       140       150       160       170       180

              190  
pF1KB6 LKLNKKPRADY 
       .           
NP_001 VSPKTGWHQLHL
              190  

>>NP_073593 (OMIM: 611001) chromatin modification-relate  (201 aa)
 initn: 1227 init1: 1155 opt: 1155  Z-score: 1138.2  bits: 217.4 E(85289): 1.2e-56
Smith-Waterman score: 1211; 94.5% identity (95.0% similar) in 201 aa overlap (1-191:1-201)

               10        20        30        40        50        60
pF1KB6 MAMHNKAAPPQIPDTRRELAELVKRKQELAETLANLERQIYAFEGSYLEDTQMYGNIIRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 MAMHNKAAPPQIPDTRRELAELVKRKQELAETLANLERQIYAFEGSYLEDTQMYGNIIRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 WDRYLTNQKNSNSKNDRRNRKFKEAERLFSKSSVTSAAAVSALAGVQDQLIEKREPGSGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 WDRYLTNQKNSNSKNDRRNRKFKEAERLFSKSSVTSAAAVSALAGVQDQLIEKREPGSGT
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KB6 ESDTSPDFHNQENEPSQEDPEDLDGSVQGVKPQKAASSTSSGSHHSSHKKRKNKNRH---
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
NP_073 ESDTSPDFHNQENEPSQEDPEDLDGSVQGVKPQKAASSTSSGSHHSSHKKRKNKNRHSPS
              130       140       150       160       170       180

              180       190 
pF1KB6 -------RIDLKLNKKPRADY
              .:::::::::::::
NP_073 GMFDYDFEIDLKLNKKPRADY
              190       200 




191 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:08:26 2016 done: Sat Nov  5 00:08:27 2016
 Total Scan time:  6.590 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]