FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6890, 202 aa
  1>>>pF1KB6890 202 - 202 aa - 202 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5762+/-0.000309; mu= 11.7960+/- 0.019
 mean_var=65.7707+/-13.264, 0's: 0 Z-trim(117.5): 2  B-trim: 365 in 1/50
 Lambda= 0.158146
 statistics sampled from 29614 (29616) to 29614 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.738), E-opt: 0.2 (0.347), width:  16
 Scan time:  4.690

The best scores are:                                      opt bits E(85289)
NP_060624 (OMIM: 609190) histone chaperone ASF1B [ ( 202) 1393 326.1 2.5e-89
NP_054753 (OMIM: 609189) histone chaperone ASF1A [ ( 204)  975 230.7 1.3e-60


>>NP_060624 (OMIM: 609190) histone chaperone ASF1B [Homo  (202 aa)
 initn: 1393 init1: 1393 opt: 1393  Z-score: 1724.9  bits: 326.1 E(85289): 2.5e-89
Smith-Waterman score: 1393; 100.0% identity (100.0% similar) in 202 aa overlap (1-202:1-202)

               10        20        30        40        50        60
pF1KB6 MAKVSVLNVAVLENPSPFHSPFRFEISFECSEALADDLEWKIIYVGSAESEEFDQILDSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MAKVSVLNVAVLENPSPFHSPFRFEISFECSEALADDLEWKIIYVGSAESEEFDQILDSV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LVGPVPAGRHMFVFQADAPNPSLIPETDAVGVTVVLITCTYHGQEFIRVGYYVNNEYLNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LVGPVPAGRHMFVFQADAPNPSLIPETDAVGVTVVLITCTYHGQEFIRVGYYVNNEYLNP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ELRENPPMKPDFSQLQRNILASNPRVTRFHINWDNNMDRLEAIETQDPSLGCGLPLNCTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 ELRENPPMKPDFSQLQRNILASNPRVTRFHINWDNNMDRLEAIETQDPSLGCGLPLNCTP
              130       140       150       160       170       180

              190       200  
pF1KB6 IKGLGLPGCIPGLLPENSMDCI
       ::::::::::::::::::::::
NP_060 IKGLGLPGCIPGLLPENSMDCI
              190       200  

>>NP_054753 (OMIM: 609189) histone chaperone ASF1A [Homo  (204 aa)
 initn: 1018 init1: 952 opt: 975  Z-score: 1209.4  bits: 230.7 E(85289): 1.3e-60
Smith-Waterman score: 975; 70.6% identity (86.8% similar) in 204 aa overlap (1-202:1-204)

               10        20        30        40        50        60
pF1KB6 MAKVSVLNVAVLENPSPFHSPFRFEISFECSEALADDLEWKIIYVGSAESEEFDQILDSV
       ::::.: ::.::.:::::..::.:::.::: : :..::::::::::::::::.::.::::
NP_054 MAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDSV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LVGPVPAGRHMFVFQADAPNPSLIPETDAVGVTVVLITCTYHGQEFIRVGYYVNNEYLNP
       :::::::::::::::::::::.:::..::::::::::::::.::::::::::::::: . 
NP_054 LVGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTET
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ELRENPPMKPDFSQLQRNILASNPRVTRFHINWDNNMDRLEAIETQDPSLGCGLPLNCTP
       :::::::.:::::.:::::::::::::::::::..: ..::  :...:.:   :  .  :
NP_054 ELRENPPVKPDFSKLQRNILASNPRVTRFHINWEDNTEKLEDAESSNPNLQSLLSTDALP
              130       140       150       160       170       180

                190       200  
pF1KB6 I--KGLGLPGCIPGLLPENSMDCI
          :: .      ... :. :::.
NP_054 SASKGWSTSENSLNVMLESHMDCM
              190       200    




202 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:20:04 2016 done: Sat Nov  5 00:20:04 2016
 Total Scan time:  4.690 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]