FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6891, 183 aa
  1>>>pF1KB6891 183 - 183 aa - 183 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0251+/-0.000878; mu= 9.2217+/- 0.053
 mean_var=71.9262+/-14.545, 0's: 0 Z-trim(106.1): 9  B-trim: 0 in 0/50
 Lambda= 0.151227
 statistics sampled from 8759 (8763) to 8759 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.269), width:  16
 Scan time:  1.720

The best scores are:                                      opt bits E(32554)
CCDS41655.1 FTH1 gene_id:2495|Hs108|chr11          ( 183) 1222 275.5 1.3e-74
CCDS4128.1 FTMT gene_id:94033|Hs108|chr5           ( 242)  981 223.0 1.1e-58
CCDS14227.1 FTHL17 gene_id:53940|Hs108|chrX        ( 183)  800 183.4 6.6e-47
CCDS33070.1 FTL gene_id:2512|Hs108|chr19           ( 175)  696 160.7 4.3e-40


>>CCDS41655.1 FTH1 gene_id:2495|Hs108|chr11               (183 aa)
 initn: 1222 init1: 1222 opt: 1222  Z-score: 1453.2  bits: 275.5 E(32554): 1.3e-74
Smith-Waterman score: 1222; 100.0% identity (100.0% similar) in 183 aa overlap (1-183:1-183)

               10        20        30        40        50        60
pF1KB6 MTTASTSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MTTASTSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 HEEREHAEKLMKLQNQRGGRIFLQDIKKPDCDDWESGLNAMECALHLEKNVNQSLLELHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 HEEREHAEKLMKLQNQRGGRIFLQDIKKPDCDDWESGLNAMECALHLEKNVNQSLLELHK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LATDKNDPHLCDFIETHYLNEQVKAIKELGDHVTNLRKMGAPESGLAEYLFDKHTLGDSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LATDKNDPHLCDFIETHYLNEQVKAIKELGDHVTNLRKMGAPESGLAEYLFDKHTLGDSD
              130       140       150       160       170       180

          
pF1KB6 NES
       :::
CCDS41 NES
          

>>CCDS4128.1 FTMT gene_id:94033|Hs108|chr5                (242 aa)
 initn: 986 init1: 971 opt: 981  Z-score: 1167.1  bits: 223.0 E(32554): 1.1e-58
Smith-Waterman score: 981; 80.6% identity (93.9% similar) in 180 aa overlap (4-183:63-242)

                                          10        20        30   
pF1KB6                            MTTASTSQVRQNYHQDSEAAINRQINLELYASY
                                     :. :.::::.: ::::::::::::::::::
CCDS41 APGRPLDPRQIAPRRPLAAAASSRDPTGPAAGPSRVRQNFHPDSEAAINRQINLELYASY
             40        50        60        70        80        90  

            40        50        60        70        80        90   
pF1KB6 VYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKPDCDD
       :::::.:::.::::::.::..::::::.:: :::::::.::::::::: :::::::. ::
CCDS41 VYLSMAYYFSRDDVALNNFSRYFLHQSREETEHAEKLMRLQNQRGGRIRLQDIKKPEQDD
            100       110       120       130       140       150  

           100       110       120       130       140       150   
pF1KB6 WESGLNAMECALHLEKNVNQSLLELHKLATDKNDPHLCDFIETHYLNEQVKAIKELGDHV
       :::::.:::::: ::::::::::::: ::.::.:::::::.::.:::::::.::::::::
CCDS41 WESGLHAMECALLLEKNVNQSLLELHALASDKGDPHLCDFLETYYLNEQVKSIKELGDHV
            160       170       180       190       200       210  

           160       170       180   
pF1KB6 TNLRKMGAPESGLAEYLFDKHTLGDSDNES
        :: :::::..:::::::: ::::. ....
CCDS41 HNLVKMGAPDAGLAEYLFDTHTLGNENKQN
            220       230       240  

>>CCDS14227.1 FTHL17 gene_id:53940|Hs108|chrX             (183 aa)
 initn: 798 init1: 798 opt: 800  Z-score: 955.6  bits: 183.4 E(32554): 6.6e-47
Smith-Waterman score: 800; 65.0% identity (88.5% similar) in 183 aa overlap (1-183:1-183)

               10        20        30        40        50        60
pF1KB6 MTTASTSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQS
       :.::. :::::.:  . .:::: .:.::::.::.::::..::.::::::.:: .:::. :
CCDS14 MATAQPSQVRQKYDTNCDAAINSHITLELYTSYLYLSMAFYFNRDDVALENFFRYFLRLS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 HEEREHAEKLMKLQNQRGGRIFLQDIKKPDCDDWESGLNAMECALHLEKNVNQSLLELHK
        .. :::.:::.::: :::.: :.::.::.:. ::::: ::: :.:::::::::::.:..
CCDS14 DDKMEHAQKLMRLQNLRGGHICLHDIRKPECQGWESGLVAMESAFHLEKNVNQSLLDLYQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LATDKNDPHLCDFIETHYLNEQVKAIKELGDHVTNLRKMGAPESGLAEYLFDKHTLGDSD
       ::..:.::.:: :.:.:::.::::.::::: .:.::::. .::.::::::::: :::   
CCDS14 LAVEKGDPQLCHFLESHYLHEQVKTIKELGGYVSNLRKICSPEAGLAEYLFDKLTLGGRV
              130       140       150       160       170       180

          
pF1KB6 NES
       .:.
CCDS14 KET
          

>>CCDS33070.1 FTL gene_id:2512|Hs108|chr19                (175 aa)
 initn: 696 init1: 696 opt: 696  Z-score: 833.3  bits: 160.7 E(32554): 4.3e-40
Smith-Waterman score: 696; 56.7% identity (86.0% similar) in 171 aa overlap (6-176:2-172)

               10        20        30        40        50        60
pF1KB6 MTTASTSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQS
            .::.::::  : :::.:  .:: : :::.:::...:::::::::.. ...: . .
CCDS33     MSSQIRQNYSTDVEAAVNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELA
                   10        20        30        40        50      

               70        80        90       100       110       120
pF1KB6 HEEREHAEKLMKLQNQRGGRIFLQDIKKPDCDDWESGLNAMECALHLEKNVNQSLLELHK
       .:.::  :.:.:.::::::: ..::::::  :.: .  .::. :. :::..::.::.:: 
CCDS33 EEKREGYERLLKMQNQRGGRALFQDIKKPAEDEWGKTPDAMKAAMALEKKLNQALLDLHA
         60        70        80        90       100       110      

              130       140       150       160       170       180
pF1KB6 LATDKNDPHLCDFIETHYLNEQVKAIKELGDHVTNLRKMGAPESGLAEYLFDKHTLGDSD
       :.. ..:::::::.:::.:.:.:: ::..:::.:::...:.::.::.::::.. ::    
CCDS33 LGSARTDPHLCDFLETHFLDEEVKLIKKMGDHLTNLHRLGGPEAGLGEYLFERLTLKHD 
        120       130       140       150       160       170      

          
pF1KB6 NES




183 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:25:26 2016 done: Sat Nov  5 00:25:26 2016
 Total Scan time:  1.720 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]