FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6892, 202 aa
  1>>>pF1KB6892 202 - 202 aa - 202 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.9391+/-0.000816; mu= -4.8522+/- 0.049
 mean_var=314.3466+/-62.301, 0's: 0 Z-trim(118.3): 15  B-trim: 0 in 0/55
 Lambda= 0.072339
 statistics sampled from 19191 (19205) to 19191 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.857), E-opt: 0.2 (0.59), width:  16
 Scan time:  2.260

The best scores are:                                      opt bits E(32554)
CCDS12773.1 PRRG2 gene_id:5639|Hs108|chr19         ( 202) 1441 162.3 1.8e-40


>>CCDS12773.1 PRRG2 gene_id:5639|Hs108|chr19              (202 aa)
 initn: 1441 init1: 1441 opt: 1441  Z-score: 839.8  bits: 162.3 E(32554): 1.8e-40
Smith-Waterman score: 1441; 100.0% identity (100.0% similar) in 202 aa overlap (1-202:1-202)

               10        20        30        40        50        60
pF1KB6 MRGHPSLLLLYMALTTCLDTSPSEETDQEVFLGPPEAQSFLSSHTRIPRANHWDLELLTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MRGHPSLLLLYMALTTCLDTSPSEETDQEVFLGPPEAQSFLSSHTRIPRANHWDLELLTP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GNLERECLEERCSWEEAREYFEDNTLTERFWESYIYNGKGGRGRVDVASLAVGLTGGILL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GNLERECLEERCSWEEAREYFEDNTLTERFWESYIYNGKGGRGRVDVASLAVGLTGGILL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 IVLAGLGAFWYLRWRQHRGQQPCPQEAGLISPLSPLNPLGPPTPLPPPPPPPPGLPTYEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IVLAGLGAFWYLRWRQHRGQQPCPQEAGLISPLSPLNPLGPPTPLPPPPPPPPGLPTYEQ
              130       140       150       160       170       180

              190       200  
pF1KB6 ALAASGVHDAPPPPYTSLRRPH
       ::::::::::::::::::::::
CCDS12 ALAASGVHDAPPPPYTSLRRPH
              190       200  




202 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:08:23 2016 done: Sat Nov  5 14:08:24 2016
 Total Scan time:  2.260 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]