FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6893, 184 aa
  1>>>pF1KB6893 184 - 184 aa - 184 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9906+/-0.000355; mu= 14.5150+/- 0.022
 mean_var=63.1277+/-12.437, 0's: 0 Z-trim(114.8): 10  B-trim: 683 in 1/50
 Lambda= 0.161423
 statistics sampled from 24823 (24827) to 24823 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.291), width:  16
 Scan time:  5.710

The best scores are:                                      opt bits E(85289)
NP_001183 (OMIM: 109545) tumor necrosis factor rec ( 184) 1227 294.0 9.3e-80


>>NP_001183 (OMIM: 109545) tumor necrosis factor recepto  (184 aa)
 initn: 1227 init1: 1227 opt: 1227  Z-score: 1552.9  bits: 294.0 E(85289): 9.3e-80
Smith-Waterman score: 1227; 99.5% identity (100.0% similar) in 184 aa overlap (1-184:1-184)

               10        20        30        40        50        60
pF1KB6 MLQMAGQCSQNEYFDSLLHACIPCQLRCSSNTPPLTCQRYCNASVTNSVKGTNAILWTCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLQMAGQCSQNEYFDSLLHACIPCQLRCSSNTPPLTCQRYCNASVTNSVKGTNAILWTCL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GLSLIISLAVFVLMFLLRKISSEPLKDEFKNTGSGLLGMANIDLEKSRTGDEIILPRGLE
       ::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::
NP_001 GLSLIISLAVFVLMFLLRKINSEPLKDEFKNTGSGLLGMANIDLEKSRTGDEIILPRGLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 YTVEECTCEDCIKSKPKVDSDHCFPLPAMEEGATILVTTKTNDYCKSLPAALSATEIEKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YTVEECTCEDCIKSKPKVDSDHCFPLPAMEEGATILVTTKTNDYCKSLPAALSATEIEKS
              130       140       150       160       170       180

           
pF1KB6 ISAR
       ::::
NP_001 ISAR
           




184 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:10:06 2016 done: Sat Nov  5 04:10:07 2016
 Total Scan time:  5.710 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]