FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6894, 202 aa
  1>>>pF1KB6894 202 - 202 aa - 202 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9318+/-0.000714; mu= 15.2556+/- 0.043
 mean_var=58.4947+/-11.933, 0's: 0 Z-trim(108.8): 15  B-trim: 0 in 0/51
 Lambda= 0.167693
 statistics sampled from 10437 (10443) to 10437 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.321), width:  16
 Scan time:  2.140

The best scores are:                                      opt bits E(32554)
CCDS13872.1 LIF gene_id:3976|Hs108|chr22           ( 202) 1352 334.9 2.1e-92


>>CCDS13872.1 LIF gene_id:3976|Hs108|chr22                (202 aa)
 initn: 1352 init1: 1352 opt: 1352  Z-score: 1772.4  bits: 334.9 E(32554): 2.1e-92
Smith-Waterman score: 1352; 100.0% identity (100.0% similar) in 202 aa overlap (1-202:1-202)

               10        20        30        40        50        60
pF1KB6 MKVLAAGVVPLLLVLHWKHGAGSPLPITPVNATCAIRHPCHNNLMNQIRSQLAQLNGSAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MKVLAAGVVPLLLVLHWKHGAGSPLPITPVNATCAIRHPCHNNLMNQIRSQLAQLNGSAN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ALFILYYTAQGEPFPNNLDKLCGPNVTDFPPFHANGTEKAKLVELYRIVVYLGTSLGNIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ALFILYYTAQGEPFPNNLDKLCGPNVTDFPPFHANGTEKAKLVELYRIVVYLGTSLGNIT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 RDQKILNPSALSLHSKLNATADILRGLLSNVLCRLCSKYHVGHVDVTYGPDTSGKDVFQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RDQKILNPSALSLHSKLNATADILRGLLSNVLCRLCSKYHVGHVDVTYGPDTSGKDVFQK
              130       140       150       160       170       180

              190       200  
pF1KB6 KKLGCQLLGKYKQIIAVLAQAF
       ::::::::::::::::::::::
CCDS13 KKLGCQLLGKYKQIIAVLAQAF
              190       200  




202 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:12:22 2016 done: Sat Nov  5 14:12:22 2016
 Total Scan time:  2.140 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]