FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6901, 203 aa
  1>>>pF1KB6901 203 - 203 aa - 203 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8371+/-0.000261; mu= 8.1759+/- 0.016
 mean_var=118.6917+/-24.062, 0's: 0 Z-trim(122.7): 3  B-trim: 0 in 0/55
 Lambda= 0.117724
 statistics sampled from 41130 (41133) to 41130 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.807), E-opt: 0.2 (0.482), width:  16
 Scan time:  6.810

The best scores are:                                      opt bits E(85289)
NP_060534 (OMIM: 615165) akirin-2 [Homo sapiens]   ( 203) 1329 235.4 4.9e-62
NP_078871 (OMIM: 615164) akirin-1 isoform 1 [Homo  ( 192)  566 105.8 4.8e-23
NP_001129747 (OMIM: 615164) akirin-1 isoform 2 [Ho ( 147)  172 38.8  0.0054


>>NP_060534 (OMIM: 615165) akirin-2 [Homo sapiens]        (203 aa)
 initn: 1329 init1: 1329 opt: 1329  Z-score: 1234.7  bits: 235.4 E(85289): 4.9e-62
Smith-Waterman score: 1329; 100.0% identity (100.0% similar) in 203 aa overlap (1-203:1-203)

               10        20        30        40        50        60
pF1KB6 MACGATLKRTLDFDPLLSPASPKRRRCAPLSAPTSAAASPLSAAAATAASFSAAAASPQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MACGATLKRTLDFDPLLSPASPKRRRCAPLSAPTSAAASPLSAAAATAASFSAAAASPQK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 YLRMEPSPFGDVSSRLTTEQILYNIKQEYKRMQKRRHLETSFQQTDPCCTSDAQPHAFLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 YLRMEPSPFGDVSSRLTTEQILYNIKQEYKRMQKRRHLETSFQQTDPCCTSDAQPHAFLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SGPASPGTSSAASSPLKKEQPLFTLRQVGMICERLLKEREEKVREEYEEILNTKLAEQYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SGPASPGTSSAASSPLKKEQPLFTLRQVGMICERLLKEREEKVREEYEEILNTKLAEQYD
              130       140       150       160       170       180

              190       200   
pF1KB6 AFVKFTHDQIMRRYGEQPASYVS
       :::::::::::::::::::::::
NP_060 AFVKFTHDQIMRRYGEQPASYVS
              190       200   

>>NP_078871 (OMIM: 615164) akirin-1 isoform 1 [Homo sapi  (192 aa)
 initn: 602 init1: 390 opt: 566  Z-score: 534.7  bits: 105.8 E(85289): 4.8e-23
Smith-Waterman score: 721; 57.4% identity (77.5% similar) in 204 aa overlap (1-203:1-192)

               10         20        30        40        50         
pF1KB6 MACGATLKRTLDFDP-LLSPASPKRRRCAPLSAPTSAAASPLSAAAATAASFSAAAASPQ
       ::::::::: ..:.  ::::.:::::::::: .:: .   :    :     :..   .: 
NP_078 MACGATLKRPMEFEAALLSPGSPKRRRCAPLPGPTPGLRPP---DAEPPPPFQTQ--TPP
               10        20        30        40           50       

      60        70        80        90       100       110         
pF1KB6 KYLRMEPSPFGDVSSRLTTEQILYNIKQEYKRMQKRRHLETSFQQTDPCCTSDAQPHAFL
       . :. .:.: :.     : :::. ::::::.:.:. ::::. ..:.. : .:..:::.  
NP_078 QSLQ-QPAPPGSERRLPTPEQIFQNIKQEYSRYQRWRHLEVVLNQSEAC-ASESQPHSSA
           60        70        80        90       100        110   

     120       130       140       150       160       170         
pF1KB6 LSGPASPGTSSAASSPLKKEQPLFTLRQVGMICERLLKEREEKVREEYEEILNTKLAEQY
       :..:.:::     :: .::.:: :::::::.:::::::. :.:.:::::.::::::::::
NP_078 LTAPSSPG-----SSWMKKDQPTFTLRQVGIICERLLKDYEDKIREEYEQILNTKLAEQY
           120            130       140       150       160        

     180       190       200   
pF1KB6 DAFVKFTHDQIMRRYGEQPASYVS
       ..:::::::::::::: .:.::::
NP_078 ESFVKFTHDQIMRRYGTRPTSYVS
      170       180       190  

>>NP_001129747 (OMIM: 615164) akirin-1 isoform 2 [Homo s  (147 aa)
 initn: 364 init1: 156 opt: 172  Z-score: 174.7  bits: 38.8 E(85289): 0.0054
Smith-Waterman score: 398; 40.2% identity (56.9% similar) in 204 aa overlap (1-203:1-147)

               10         20        30        40        50         
pF1KB6 MACGATLKRTLDFDP-LLSPASPKRRRCAPLSAPTSAAASPLSAAAATAASFSAAAASPQ
       ::::::::: ..:.  ::::.:::::::::: .:: .   :    :     :..   .: 
NP_001 MACGATLKRPMEFEAALLSPGSPKRRRCAPLPGPTPGLRPP---DAEPPPPFQTQ--TPP
               10        20        30        40           50       

      60        70        80        90       100       110         
pF1KB6 KYLRMEPSPFGDVSSRLTTEQILYNIKQEYKRMQKRRHLETSFQQTDPCCTSDAQPHAFL
       . :. .:.: :.     : :::. ::::::.:.:. ::::. ..:.. : .:..:::.  
NP_001 QSLQ-QPAPPGSERRLPTPEQIFQNIKQEYSRYQRWRHLEVVLNQSEAC-ASESQPHSSA
           60        70        80        90       100        110   

     120       130       140       150       160       170         
pF1KB6 LSGPASPGTSSAASSPLKKEQPLFTLRQVGMICERLLKEREEKVREEYEEILNTKLAEQY
       :..:.::                                                  :::
NP_001 LTAPSSP--------------------------------------------------EQY
           120                                                     

     180       190       200   
pF1KB6 DAFVKFTHDQIMRRYGEQPASYVS
       ..:::::::::::::: .:.::::
NP_001 ESFVKFTHDQIMRRYGTRPTSYVS
           130       140       




203 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:28:51 2016 done: Fri Nov  4 13:28:52 2016
 Total Scan time:  6.810 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]