FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6902, 223 aa
  1>>>pF1KB6902 223 - 223 aa - 223 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7277+/-0.000758; mu= 13.5325+/- 0.046
 mean_var=90.8518+/-17.830, 0's: 0 Z-trim(110.3): 19  B-trim: 0 in 0/54
 Lambda= 0.134557
 statistics sampled from 11513 (11522) to 11513 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.354), width:  16
 Scan time:  2.040

The best scores are:                                      opt bits E(32554)
CCDS9225.1 PSMD9 gene_id:5715|Hs108|chr12          ( 223) 1461 292.9 1.1e-79
CCDS58284.1 PSMD9 gene_id:5715|Hs108|chr12         ( 118)  484 103.0 8.2e-23


>>CCDS9225.1 PSMD9 gene_id:5715|Hs108|chr12               (223 aa)
 initn: 1461 init1: 1461 opt: 1461  Z-score: 1544.2  bits: 292.9 E(32554): 1.1e-79
Smith-Waterman score: 1461; 99.6% identity (100.0% similar) in 223 aa overlap (1-223:1-223)

               10        20        30        40        50        60
pF1KB6 MSDEEARQSGGSSQAGAVTVSDVQELMRRKEEIEAQIKANYDVLESQKGIGMNEPLVDCE
       ::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
CCDS92 MSDEEARQSGGSSQAGVVTVSDVQELMRRKEEIEAQIKANYDVLESQKGIGMNEPLVDCE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GYPRSDVDLYQVRTARHNIICLQNDHKAVMKQVEEALHQLHARDKEKQARDMAEAHKEAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 GYPRSDVDLYQVRTARHNIICLQNDHKAVMKQVEEALHQLHARDKEKQARDMAEAHKEAM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SRKLGQSESQGPPRAFAKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLHNIGSVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 SRKLGQSESQGPPRAFAKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLHNIGSVV
              130       140       150       160       170       180

              190       200       210       220   
pF1KB6 QHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNIIPLQR
       :::::::::::::::::::::::::::::::::::::::::::
CCDS92 QHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNIIPLQR
              190       200       210       220   

>>CCDS58284.1 PSMD9 gene_id:5715|Hs108|chr12              (118 aa)
 initn: 484 init1: 484 opt: 484  Z-score: 523.0  bits: 103.0 E(32554): 8.2e-23
Smith-Waterman score: 538; 52.5% identity (52.9% similar) in 223 aa overlap (1-223:1-118)

               10        20        30        40        50        60
pF1KB6 MSDEEARQSGGSSQAGAVTVSDVQELMRRKEEIEAQIKANYDVLESQKGIGMNEPLVDCE
       ::::::::::::::::.:::::::::::::::::::::::::::::              
CCDS58 MSDEEARQSGGSSQAGVVTVSDVQELMRRKEEIEAQIKANYDVLES--------------
               10        20        30        40                    

               70        80        90       100       110       120
pF1KB6 GYPRSDVDLYQVRTARHNIICLQNDHKAVMKQVEEALHQLHARDKEKQARDMAEAHKEAM
                                                                   
CCDS58 ------------------------------------------------------------
                                                                   

              130       140       150       160       170       180
pF1KB6 SRKLGQSESQGPPRAFAKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLHNIGSVV
                                      :::::::::::::::::::::::::::::
CCDS58 -------------------------------GLQVDDEIVEFGSVNTQNFQSLHNIGSVV
                                        50        60        70     

              190       200       210       220   
pF1KB6 QHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNIIPLQR
       :::::::::::::::::::::::::::::::::::::::::::
CCDS58 QHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNIIPLQR
          80        90       100       110        




223 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:17:23 2016 done: Fri Nov  4 13:17:24 2016
 Total Scan time:  2.040 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]