FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6902, 223 aa
  1>>>pF1KB6902 223 - 223 aa - 223 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3056+/-0.000333; mu= 10.1945+/- 0.021
 mean_var=103.6223+/-20.332, 0's: 0 Z-trim(117.6): 20  B-trim: 0 in 0/55
 Lambda= 0.125993
 statistics sampled from 29784 (29799) to 29784 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.726), E-opt: 0.2 (0.349), width:  16
 Scan time:  5.440

The best scores are:                                      opt bits E(85289)
NP_002804 (OMIM: 603146) 26S proteasome non-ATPase ( 223) 1461 275.5 5.1e-74
NP_001248329 (OMIM: 603146) 26S proteasome non-ATP ( 118)  484 97.7 8.8e-21


>>NP_002804 (OMIM: 603146) 26S proteasome non-ATPase reg  (223 aa)
 initn: 1461 init1: 1461 opt: 1461  Z-score: 1449.9  bits: 275.5 E(85289): 5.1e-74
Smith-Waterman score: 1461; 99.6% identity (100.0% similar) in 223 aa overlap (1-223:1-223)

               10        20        30        40        50        60
pF1KB6 MSDEEARQSGGSSQAGAVTVSDVQELMRRKEEIEAQIKANYDVLESQKGIGMNEPLVDCE
       ::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
NP_002 MSDEEARQSGGSSQAGVVTVSDVQELMRRKEEIEAQIKANYDVLESQKGIGMNEPLVDCE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GYPRSDVDLYQVRTARHNIICLQNDHKAVMKQVEEALHQLHARDKEKQARDMAEAHKEAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GYPRSDVDLYQVRTARHNIICLQNDHKAVMKQVEEALHQLHARDKEKQARDMAEAHKEAM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SRKLGQSESQGPPRAFAKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLHNIGSVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SRKLGQSESQGPPRAFAKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLHNIGSVV
              130       140       150       160       170       180

              190       200       210       220   
pF1KB6 QHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNIIPLQR
       :::::::::::::::::::::::::::::::::::::::::::
NP_002 QHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNIIPLQR
              190       200       210       220   

>>NP_001248329 (OMIM: 603146) 26S proteasome non-ATPase   (118 aa)
 initn: 484 init1: 484 opt: 484  Z-score: 494.1  bits: 97.7 E(85289): 8.8e-21
Smith-Waterman score: 538; 52.5% identity (52.9% similar) in 223 aa overlap (1-223:1-118)

               10        20        30        40        50        60
pF1KB6 MSDEEARQSGGSSQAGAVTVSDVQELMRRKEEIEAQIKANYDVLESQKGIGMNEPLVDCE
       ::::::::::::::::.:::::::::::::::::::::::::::::              
NP_001 MSDEEARQSGGSSQAGVVTVSDVQELMRRKEEIEAQIKANYDVLES--------------
               10        20        30        40                    

               70        80        90       100       110       120
pF1KB6 GYPRSDVDLYQVRTARHNIICLQNDHKAVMKQVEEALHQLHARDKEKQARDMAEAHKEAM
                                                                   
NP_001 ------------------------------------------------------------
                                                                   

              130       140       150       160       170       180
pF1KB6 SRKLGQSESQGPPRAFAKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLHNIGSVV
                                      :::::::::::::::::::::::::::::
NP_001 -------------------------------GLQVDDEIVEFGSVNTQNFQSLHNIGSVV
                                        50        60        70     

              190       200       210       220   
pF1KB6 QHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNIIPLQR
       :::::::::::::::::::::::::::::::::::::::::::
NP_001 QHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNIIPLQR
          80        90       100       110        




223 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:17:24 2016 done: Fri Nov  4 13:17:25 2016
 Total Scan time:  5.440 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]