FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6903, 203 aa
  1>>>pF1KB6903 203 - 203 aa - 203 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1237+/-0.000343; mu= 15.0384+/- 0.021
 mean_var=67.3263+/-13.115, 0's: 0 Z-trim(114.6): 20  B-trim: 0 in 0/54
 Lambda= 0.156308
 statistics sampled from 24489 (24509) to 24489 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.287), width:  16
 Scan time:  6.110

The best scores are:                                      opt bits E(85289)
NP_006432 (OMIM: 604197) 5-formyltetrahydrofolate  ( 203) 1330 308.4 5.3e-84
NP_001186687 (OMIM: 604197) 5-formyltetrahydrofola ( 146)  994 232.5 2.6e-61


>>NP_006432 (OMIM: 604197) 5-formyltetrahydrofolate cycl  (203 aa)
 initn: 1330 init1: 1330 opt: 1330  Z-score: 1629.1  bits: 308.4 E(85289): 5.3e-84
Smith-Waterman score: 1330; 100.0% identity (100.0% similar) in 203 aa overlap (1-203:1-203)

               10        20        30        40        50        60
pF1KB6 MAAAAVSSAKRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MAAAAVSSAKRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EIETEEIIKDIFQRGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQPGEGDVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EIETEEIIKDIFQRGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQPGEGDVR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EEALSTGGLDLIFMPGLGFDKHGNRLGRGKGYYDAYLKRCLQHQEVKPYTLALAFKEQIC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EEALSTGGLDLIFMPGLGFDKHGNRLGRGKGYYDAYLKRCLQHQEVKPYTLALAFKEQIC
              130       140       150       160       170       180

              190       200   
pF1KB6 LQVPVNENDMKVDEVLYEDSSTA
       :::::::::::::::::::::::
NP_006 LQVPVNENDMKVDEVLYEDSSTA
              190       200   

>>NP_001186687 (OMIM: 604197) 5-formyltetrahydrofolate c  (146 aa)
 initn: 994 init1: 994 opt: 994  Z-score: 1221.7  bits: 232.5 E(85289): 2.6e-61
Smith-Waterman score: 994; 100.0% identity (100.0% similar) in 146 aa overlap (58-203:1-146)

        30        40        50        60        70        80       
pF1KB6 ERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQDEIETEEIIKDIFQRGKICFIPRYRFQS
                                     ::::::::::::::::::::::::::::::
NP_001                               MQDEIETEEIIKDIFQRGKICFIPRYRFQS
                                             10        20        30

        90       100       110       120       130       140       
pF1KB6 NHMDMVRIESPEEISLLPKTSWNIPQPGEGDVREEALSTGGLDLIFMPGLGFDKHGNRLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NHMDMVRIESPEEISLLPKTSWNIPQPGEGDVREEALSTGGLDLIFMPGLGFDKHGNRLG
               40        50        60        70        80        90

       150       160       170       180       190       200   
pF1KB6 RGKGYYDAYLKRCLQHQEVKPYTLALAFKEQICLQVPVNENDMKVDEVLYEDSSTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RGKGYYDAYLKRCLQHQEVKPYTLALAFKEQICLQVPVNENDMKVDEVLYEDSSTA
              100       110       120       130       140      




203 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:13:26 2016 done: Sat Nov  5 14:13:27 2016
 Total Scan time:  6.110 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]