Result of FASTA (omim) for
pF1KB6907
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6907, 204 aa
1>>>pF1KB6907 204 - 204 aa - 204 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5774+/-0.000315; mu= 12.6327+/- 0.020
mean_var=72.8814+/-14.374, 0's: 0 Z-trim(116.2): 26 B-trim: 0 in 0/57
Lambda= 0.150233
statistics sampled from 27211 (27237) to 27211 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.319), width: 16
Scan time: 6.220
The best scores are: opt bits E(85289)
NP_001172006 (OMIM: 601925,615244) rho GDP-dissoci ( 204) 1338 298.7 4.4e-81
NP_004300 (OMIM: 601925,615244) rho GDP-dissociati ( 204) 1338 298.7 4.4e-81
NP_001288169 (OMIM: 601925,615244) rho GDP-dissoci ( 235) 1083 243.4 2.2e-64
NP_001288170 (OMIM: 601925,615244) rho GDP-dissoci ( 235) 1083 243.4 2.2e-64
NP_001166 (OMIM: 602843) rho GDP-dissociation inhi ( 201) 938 212.0 5.5e-55
NP_001308352 (OMIM: 602843) rho GDP-dissociation i ( 201) 938 212.0 5.5e-55
NP_001308349 (OMIM: 602843) rho GDP-dissociation i ( 201) 938 212.0 5.5e-55
NP_001308350 (OMIM: 602843) rho GDP-dissociation i ( 201) 938 212.0 5.5e-55
NP_001308351 (OMIM: 602843) rho GDP-dissociation i ( 201) 938 212.0 5.5e-55
NP_001288171 (OMIM: 601925,615244) rho GDP-dissoci ( 337) 926 209.5 5.1e-54
NP_001172007 (OMIM: 601925,615244) rho GDP-dissoci ( 160) 896 202.8 2.5e-52
NP_001167 (OMIM: 602844) rho GDP-dissociation inhi ( 225) 793 180.6 1.7e-45
NP_001288172 (OMIM: 601925,615244) rho GDP-dissoci ( 249) 766 174.7 1.1e-43
XP_011521876 (OMIM: 601925,615244) PREDICTED: rho ( 249) 766 174.7 1.1e-43
>>NP_001172006 (OMIM: 601925,615244) rho GDP-dissociatio (204 aa)
initn: 1338 init1: 1338 opt: 1338 Z-score: 1576.6 bits: 298.7 E(85289): 4.4e-81
Smith-Waterman score: 1338; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)
10 20 30 40 50 60
pF1KB6 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 VSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 EIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSR
130 140 150 160 170 180
190 200
pF1KB6 FTDDDKTDHLSWEWNLTIKKDWKD
::::::::::::::::::::::::
NP_001 FTDDDKTDHLSWEWNLTIKKDWKD
190 200
>>NP_004300 (OMIM: 601925,615244) rho GDP-dissociation i (204 aa)
initn: 1338 init1: 1338 opt: 1338 Z-score: 1576.6 bits: 298.7 E(85289): 4.4e-81
Smith-Waterman score: 1338; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)
10 20 30 40 50 60
pF1KB6 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 VSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 EIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 EIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSR
130 140 150 160 170 180
190 200
pF1KB6 FTDDDKTDHLSWEWNLTIKKDWKD
::::::::::::::::::::::::
NP_004 FTDDDKTDHLSWEWNLTIKKDWKD
190 200
>>NP_001288169 (OMIM: 601925,615244) rho GDP-dissociatio (235 aa)
initn: 1083 init1: 1083 opt: 1083 Z-score: 1277.0 bits: 243.4 E(85289): 2.2e-64
Smith-Waterman score: 1083; 98.2% identity (99.4% similar) in 171 aa overlap (1-171:1-171)
10 20 30 40 50 60
pF1KB6 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 VSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 EIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSR
:::::::::::::::::::::::::::::::::::::::::::::::: ..
NP_001 EIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGSISPSHPRPGFR
130 140 150 160 170 180
190 200
pF1KB6 FTDDDKTDHLSWEWNLTIKKDWKD
NP_001 RERSSHSPGPVVAPGRVRLLLRGGAGVWDARPRGGRAVLQPRCSLASPLVAVGPV
190 200 210 220 230
>>NP_001288170 (OMIM: 601925,615244) rho GDP-dissociatio (235 aa)
initn: 1083 init1: 1083 opt: 1083 Z-score: 1277.0 bits: 243.4 E(85289): 2.2e-64
Smith-Waterman score: 1083; 98.2% identity (99.4% similar) in 171 aa overlap (1-171:1-171)
10 20 30 40 50 60
pF1KB6 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 VSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 EIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSR
:::::::::::::::::::::::::::::::::::::::::::::::: ..
NP_001 EIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGSISPSHPRPGFR
130 140 150 160 170 180
190 200
pF1KB6 FTDDDKTDHLSWEWNLTIKKDWKD
NP_001 RERSSHSPGPVVAPGRVRLLLRGGAGVWDARPRGGRAVLQPRCSLASPLVAVGPV
190 200 210 220 230
>>NP_001166 (OMIM: 602843) rho GDP-dissociation inhibito (201 aa)
initn: 961 init1: 925 opt: 938 Z-score: 1108.2 bits: 212.0 E(85289): 5.5e-55
Smith-Waterman score: 938; 67.0% identity (85.0% similar) in 206 aa overlap (1-204:1-201)
10 20 30 40 50
pF1KB6 MAEQEPTAEQLAQIAAENEEDE--HSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGR
:.:. : . . :...:: ..::::: :::..:.::.::::::: :::..:::
NP_001 MTEKAPEPH-----VEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGD
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 VAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRV
: .::..:::::: ::::: :::::. .:::::::..::...::::: :::.:: :.:
NP_001 GPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 NREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIK
::.::::.::.::::: :::.::. .:::::::: ::::::::::::::::::::.: :
NP_001 NRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNK
120 130 140 150 160 170
180 190 200
pF1KB6 SRFTDDDKTDHLSWEWNLTIKKDWKD
: :::::: :::::::::.:::.: .
NP_001 SFFTDDDKQDHLSWEWNLSIKKEWTE
180 190 200
>>NP_001308352 (OMIM: 602843) rho GDP-dissociation inhib (201 aa)
initn: 961 init1: 925 opt: 938 Z-score: 1108.2 bits: 212.0 E(85289): 5.5e-55
Smith-Waterman score: 938; 67.0% identity (85.0% similar) in 206 aa overlap (1-204:1-201)
10 20 30 40 50
pF1KB6 MAEQEPTAEQLAQIAAENEEDE--HSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGR
:.:. : . . :...:: ..::::: :::..:.::.::::::: :::..:::
NP_001 MTEKAPEPH-----VEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGD
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 VAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRV
: .::..:::::: ::::: :::::. .:::::::..::...::::: :::.:: :.:
NP_001 GPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 NREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIK
::.::::.::.::::: :::.::. .:::::::: ::::::::::::::::::::.: :
NP_001 NRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNK
120 130 140 150 160 170
180 190 200
pF1KB6 SRFTDDDKTDHLSWEWNLTIKKDWKD
: :::::: :::::::::.:::.: .
NP_001 SFFTDDDKQDHLSWEWNLSIKKEWTE
180 190 200
>>NP_001308349 (OMIM: 602843) rho GDP-dissociation inhib (201 aa)
initn: 961 init1: 925 opt: 938 Z-score: 1108.2 bits: 212.0 E(85289): 5.5e-55
Smith-Waterman score: 938; 67.0% identity (85.0% similar) in 206 aa overlap (1-204:1-201)
10 20 30 40 50
pF1KB6 MAEQEPTAEQLAQIAAENEEDE--HSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGR
:.:. : . . :...:: ..::::: :::..:.::.::::::: :::..:::
NP_001 MTEKAPEPH-----VEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGD
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 VAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRV
: .::..:::::: ::::: :::::. .:::::::..::...::::: :::.:: :.:
NP_001 GPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 NREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIK
::.::::.::.::::: :::.::. .:::::::: ::::::::::::::::::::.: :
NP_001 NRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNK
120 130 140 150 160 170
180 190 200
pF1KB6 SRFTDDDKTDHLSWEWNLTIKKDWKD
: :::::: :::::::::.:::.: .
NP_001 SFFTDDDKQDHLSWEWNLSIKKEWTE
180 190 200
>>NP_001308350 (OMIM: 602843) rho GDP-dissociation inhib (201 aa)
initn: 961 init1: 925 opt: 938 Z-score: 1108.2 bits: 212.0 E(85289): 5.5e-55
Smith-Waterman score: 938; 67.0% identity (85.0% similar) in 206 aa overlap (1-204:1-201)
10 20 30 40 50
pF1KB6 MAEQEPTAEQLAQIAAENEEDE--HSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGR
:.:. : . . :...:: ..::::: :::..:.::.::::::: :::..:::
NP_001 MTEKAPEPH-----VEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGD
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 VAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRV
: .::..:::::: ::::: :::::. .:::::::..::...::::: :::.:: :.:
NP_001 GPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 NREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIK
::.::::.::.::::: :::.::. .:::::::: ::::::::::::::::::::.: :
NP_001 NRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNK
120 130 140 150 160 170
180 190 200
pF1KB6 SRFTDDDKTDHLSWEWNLTIKKDWKD
: :::::: :::::::::.:::.: .
NP_001 SFFTDDDKQDHLSWEWNLSIKKEWTE
180 190 200
>>NP_001308351 (OMIM: 602843) rho GDP-dissociation inhib (201 aa)
initn: 961 init1: 925 opt: 938 Z-score: 1108.2 bits: 212.0 E(85289): 5.5e-55
Smith-Waterman score: 938; 67.0% identity (85.0% similar) in 206 aa overlap (1-204:1-201)
10 20 30 40 50
pF1KB6 MAEQEPTAEQLAQIAAENEEDE--HSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGR
:.:. : . . :...:: ..::::: :::..:.::.::::::: :::..:::
NP_001 MTEKAPEPH-----VEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGD
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 VAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRV
: .::..:::::: ::::: :::::. .:::::::..::...::::: :::.:: :.:
NP_001 GPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 NREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIK
::.::::.::.::::: :::.::. .:::::::: ::::::::::::::::::::.: :
NP_001 NRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNK
120 130 140 150 160 170
180 190 200
pF1KB6 SRFTDDDKTDHLSWEWNLTIKKDWKD
: :::::: :::::::::.:::.: .
NP_001 SFFTDDDKQDHLSWEWNLSIKKEWTE
180 190 200
>>NP_001288171 (OMIM: 601925,615244) rho GDP-dissociatio (337 aa)
initn: 946 init1: 926 opt: 926 Z-score: 1090.8 bits: 209.5 E(85289): 5.1e-54
Smith-Waterman score: 926; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)
10 20 30 40 50 60
pF1KB6 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 VSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 EIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSR
:::::::::::::::::::::::::
NP_001 EIVSGMKYIQHTYRKGVKIDKTDYMTTTRPTTCPGSGISPSRRTGRTEPSQRRAGQTDGR
130 140 150 160 170 180
204 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 13:07:07 2016 done: Fri Nov 4 13:07:08 2016
Total Scan time: 6.220 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]