FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6910, 224 aa
  1>>>pF1KB6910 224 - 224 aa - 224 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8686+/-0.00121; mu= 3.7159+/- 0.072
 mean_var=164.1267+/-33.179, 0's: 0 Z-trim(106.3): 19  B-trim: 80 in 2/50
 Lambda= 0.100112
 statistics sampled from 8874 (8877) to 8874 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.632), E-opt: 0.2 (0.273), width:  16
 Scan time:  1.820

The best scores are:                                      opt bits E(32554)
CCDS2229.1 SPC25 gene_id:57405|Hs108|chr2          ( 224) 1415 216.0 1.5e-56


>>CCDS2229.1 SPC25 gene_id:57405|Hs108|chr2               (224 aa)
 initn: 1415 init1: 1415 opt: 1415  Z-score: 1128.5  bits: 216.0 E(32554): 1.5e-56
Smith-Waterman score: 1415; 100.0% identity (100.0% similar) in 224 aa overlap (1-224:1-224)

               10        20        30        40        50        60
pF1KB6 MVEDELALFDKSINEFWNKFKSTDTSCQMAGLRDTYKDSIKAFAEKLSVKLKEEERMVEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 MVEDELALFDKSINEFWNKFKSTDTSCQMAGLRDTYKDSIKAFAEKLSVKLKEEERMVEM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 FLEYQNQISRQNKLIQEKKDNLLKLIAEVKGKKQELEVLTANIQDLKEEYSRKKETISTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 FLEYQNQISRQNKLIQEKKDNLLKLIAEVKGKKQELEVLTANIQDLKEEYSRKKETISTA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 NKANAERLKRLQKSADLYKDRLGLEIRKIYGEKLQFIFTNIDPKNPESPFMFSLHLNEAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 NKANAERLKRLQKSADLYKDRLGLEIRKIYGEKLQFIFTNIDPKNPESPFMFSLHLNEAR
              130       140       150       160       170       180

              190       200       210       220    
pF1KB6 DYEVSDSAPHLEGLAEFQENVRKTNNFSAFLANVRKAFTATVYN
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS22 DYEVSDSAPHLEGLAEFQENVRKTNNFSAFLANVRKAFTATVYN
              190       200       210       220    




224 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:11:46 2016 done: Sat Nov  5 20:11:46 2016
 Total Scan time:  1.820 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]